Joseph Dundas, Ph.D.
Affiliations: | 2011 | University of Illinois at Chicago, Chicago, IL, United States |
Area:
Bioinformatics Biology, Molecular BiologyGoogle:
"Joseph Dundas"Parents
Sign in to add mentor| Jie Liang | grad student | 2011 | University of Illinois, Chicago | |
| (Global, Local, and Topological Structural Comparison of Biomolecules.) | ||||
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Publications
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| Zhao J, Dundas J, Kachalo S, et al. (2011) Accuracy of functional surfaces on comparatively modeled protein structures. Journal of Structural and Functional Genomics. 12: 97-107 |
| Cui J, Hao J, Ulanovskaya OA, et al. (2011) Creation and manipulation of common functional groups en route to a skeletally diverse chemical library. Proceedings of the National Academy of Sciences of the United States of America. 108: 6763-8 |
| Dundas J, Adamian L, Liang J. (2011) Structural signatures of enzyme binding pockets from order-independent surface alignment: a study of metalloendopeptidase and NAD binding proteins. Journal of Molecular Biology. 406: 713-29 |
| Zhang J, Dundas J, Lin M, et al. (2009) Prediction of geometrically feasible three-dimensional structures of pseudoknotted RNA through free energy estimation. Rna (New York, N.Y.). 15: 2248-63 |
| Tseng YY, Dundas J, Liang J. (2009) Predicting protein function and binding profile via matching of local evolutionary and geometric surface patterns. Journal of Molecular Biology. 387: 451-64 |
| Liang J, Tseng YY, Dundas J, et al. (2008) Chapter 4. Predicting and characterizing protein functions through matching geometric and evolutionary patterns of binding surfaces. Advances in Protein Chemistry and Structural Biology. 75: 107-41 |
| Dundas J, Binkowski TA, DasGupta B, et al. (2007) Topology independent protein structural alignment. Bmc Bioinformatics. 8: 388 |
| Dundas J, Ouyang Z, Tseng J, et al. (2006) CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Research. 34: W116-8 |