Ilya Vakser
Affiliations: | Biochemistry & Molecular Biology | University of Kansas, Lawrence, KS, United States |
Area:
Bioinformatics Biology, Molecular BiologyGoogle:
"Ilya Vakser"
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Publications
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Singh A, Copeland MM, Kundrotas PJ, et al. (2023) GRAMM Web Server for Protein Docking. Methods in Molecular Biology (Clifton, N.J.). 2714: 101-112 |
Vakser IA. (2023) Prediction of protein interactions is essential for studying biomolecular mechanisms. Proteomics. 23: e2300219 |
Chen SJ, Hassan M, Jernigan RL, et al. (2022) Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America. 120: e2214423119 |
Jenkins NW, Kundrotas PJ, Vakser IA. (2022) Size of the protein-protein energy funnel in crowded environment. Frontiers in Molecular Biosciences. 9: 1031225 |
Collins KW, Copeland MM, Kotthoff I, et al. (2022) DOCKGROUND resource for protein recognition studies. Protein Science : a Publication of the Protein Society. e4481 |
Vakser IA, Grudinin S, Jenkins NW, et al. (2022) Docking-based long timescale simulation of cell-size protein systems at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 119: e2210249119 |
Malladi S, Powell HR, David A, et al. (2022) GWYRE: A Resource for Mapping Variants onto Experimental and Modeled Structures of Human Protein Complexes. Journal of Molecular Biology. 434: 167608 |
Kotthoff I, Kundrotas PJ, Vakser IA. (2022) DOCKGROUND membrane protein-protein set. Plos One. 17: e0267531 |
Kotthoff I, Kundrotas PJ, Vakser IA. (2022) Dockground scoring benchmarks for protein docking. Proteins |
Lensink MF, Brysbaert G, Mauri T, et al. (2021) Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins |