Russell P. Darst, Ph.D.
Affiliations: | 2003 | University of Virginia, Charlottesville, VA |
Area:
Molecular Biology, BiochemistryGoogle:
"Russell Darst"Parents
Sign in to add mentorDavid T. Auble | grad student | 2003 | UVA | |
(Remodeling the TBP -DNA complex.) |
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Publications
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Knight P, Gauthier ML, Pardo CE, et al. (2021) Methylscaper: an R/shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data. Bioinformatics (Oxford, England) |
Stees JR, Hossain MA, Sunose T, et al. (2015) High Fractional Occupancy of a Tandem MARE and its Role in Long-Range β-globin Gene Regulation. Molecular and Cellular Biology |
Pardo CE, Nabilsi NH, Darst RP, et al. (2015) Integrated DNA methylation and chromatin structural analysis at single-molecule resolution. Methods in Molecular Biology (Clifton, N.J.). 1288: 123-41 |
Nabilsi NH, Deleyrolle LP, Darst RP, et al. (2014) Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma. Genome Research. 24: 329-39 |
Darst RP, Haecker I, Pardo CE, et al. (2013) Epigenetic diversity of Kaposi's sarcoma-associated herpesvirus. Nucleic Acids Research. 41: 2993-3009 |
Darst RP, Nabilsi NH, Pardo CE, et al. (2012) DNA methyltransferase accessibility protocol for individual templates by deep sequencing. Methods in Enzymology. 513: 185-204 |
Darst RP, Pardo CE, Pondugula S, et al. (2012) Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit. Methods in Molecular Biology (Clifton, N.J.). 833: 125-41 |
Delmas AL, Riggs BM, Pardo CE, et al. (2011) WIF1 is a frequent target for epigenetic silencing in squamous cell carcinoma of the cervix. Carcinogenesis. 32: 1625-33 |
Pardo CE, Darst RP, Nabilsi NH, et al. (2011) Simultaneous single-molecule mapping of protein-DNA interactions and DNA methylation by MAPit. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 21.22 |
Pardo CE, Carr IM, Hoffman CJ, et al. (2011) MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects. Nucleic Acids Research. 39: e5 |