Matthew D. Whiteside, Ph.D.
Affiliations: | 2013 | Molecular Biology and Biochemistry | Simon Fraser University, Burnaby, British Columbia, Canada |
Area:
Bioinformatics Biology, Genetics, Evolution and Development BiologyGoogle:
"Matthew Whiteside"Parents
Sign in to add mentor| Fiona S. L. Brinkman | grad student | 2013 | Simon Fraser | |
| (Computational Ortholog Prediction: Evaluating Use Cases and Improving High-Throughput Performance.) | ||||
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Publications
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| Le KK, Whiteside MD, Hopkins JE, et al. (2018) Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses. Database : the Journal of Biological Databases and Curation. 2018: 1-10 |
| Panmanee W, Charoenlap N, Atichartpongkul S, et al. (2017) The OxyR-regulated phnW gene encoding 2-aminoethylphosphonate:pyruvate aminotransferase helps protect Pseudomonas aeruginosa from tert-butyl hydroperoxide. Plos One. 12: e0189066 |
| Whiteside MD, Gannon VPJ, Laing CR. (2017) Phylotyper: in silico predictor of gene subtypes. Bioinformatics (Oxford, England) |
| Laing CR, Whiteside MD, Gannon VPJ. (2017) Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar. Frontiers in Microbiology. 8: 1345 |
| Whiteside MD, Laing CR, Manji A, et al. (2016) SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli. Bmc Microbiology. 16: 65 |
| Whiteside MD, Laing CR, Manji A, et al. (2014) SuperPhy: A pilot resource for integrated phylogenetic and epidemiological analysis of pathogens Bioinformatics 2014 - 5th Int. Conf. On Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 7th Int. Joint Conference On Biomedical Engineering Systems and Technologies, Biostec 2014. 40-48 |
| Frédéric MY, Lundin VF, Whiteside MD, et al. (2013) Identification of 526 conserved metazoan genetic innovations exposes a new role for cofactor E-like in neuronal microtubule homeostasis. Plos Genetics. 9: e1003804 |
| Whiteside MD, Winsor GL, Laird MR, et al. (2013) OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. Nucleic Acids Research. 41: D366-76 |
| Bashashati A, Johnson NA, Khodabakhshi AH, et al. (2012) B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma. American Journal of Clinical Pathology. 137: 805-14 |
| Winsor GL, Lam DK, Fleming L, et al. (2011) Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Research. 39: D596-600 |