James J. Collins, PhD
Affiliations: | Biological Engineering | Massachusetts Institute of Technology, Cambridge, MA, United States |
Area:
Systems Biology, Synthetic BiologyWebsite:
http://collinslab.mit.edu/Google:
"James Collins"Bio:
https://en.wikipedia.org/wiki/James_Collins_(bioengineer)
Cross-listing: Computational Biology Tree - Chemistry Tree - Neurotree
Children
Sign in to add trainee| Meagan Hamblin | research assistant | (ID Tree) | |
| Nima Dehghani | grad student | Boston University (Neurotree) | |
| Timothy S. Gardner | grad student | 2000 | Boston University |
| Kristen A. Richardson | grad student | 2001 | Boston University (Neurotree) |
| Anthony P. Scinicariello | grad student | 2002 | Boston University (Computational Biology Tree) |
| William J. Blake | grad student | 2003 | Boston University (Computational Biology Tree) |
| Farren Isaacs | grad student | 2003 | Boston University (Neurotree) |
| Attila A. Priplata | grad student | 2005 | Boston University (Computational Biology Tree) |
| Nicholas J. Guido | grad student | 2006 | Boston University (Computational Biology Tree) |
| Daniel John Dwyer | grad student | 2007 | Boston University |
| Boris Hayete | grad student | 2007 | Boston University (Computational Biology Tree) |
| Timothy K. Lu | grad student | 2008 | Harvard-MIT Division of Health Sciences and Technology (Chemistry Tree) |
| Kevin F. Murphy | grad student | 2008 | Boston University |
| Tara L. Deans | grad student | 2009 | Boston University (Computational Biology Tree) |
| Michael A. Kohanski | grad student | 2009 | Boston University (Computational Biology Tree) |
| David R. Lorenz | grad student | 2009 | Boston University (Computational Biology Tree) |
| Ayla Ergun | grad student | 2010 | Boston University (Computational Biology Tree) |
| Ari E. Friedland | grad student | 2010 | Boston University (Computational Biology Tree) |
| Michael S. Koris | grad student | 2010 | Boston University (Computational Biology Tree) |
| Carolyn A. Lawrence | grad student | 2010 | Boston University (Computational Biology Tree) |
| Ellen C. O'Shaughnessy | grad student | 2010 | Boston University (Computational Biology Tree) |
| Jarred M. Callura | grad student | 2012 | Boston University (Computational Biology Tree) |
| Devora Cohen-Karni | grad student | 2012 | Boston University (Computational Biology Tree) |
| Alexander M. Fichtenholtz | grad student | 2012 | Boston University (Computational Biology Tree) |
| Henry Hung-Yi Lee | grad student | 2012 | Boston University |
| Kevin D. Litcofsky | grad student | 2012 | Boston University (Computational Biology Tree) |
| Jonathan Alexander Winkler | grad student | 2012 | Boston University |
| Kyle R. Allison | grad student | 2013 | Boston University (Computational Biology Tree) |
| Sheetal Modi | grad student | 2013 | Boston University (Computational Biology Tree) |
| Catherine S. Spina | grad student | 2013 | Boston University (Computational Biology Tree) |
| Nicole M. Vega | grad student | 2013 | Boston University (Computational Biology Tree) |
| Raffi B. Afeyan | grad student | 2014 | Boston University (Computational Biology Tree) |
| Hu Li | post-doc | MIT (Neurotree) | |
| Emma J Chory | post-doc | 2018- | MIT (Chemistry Tree) |
| Daichi Nozaki | post-doc | 1997-1998 | (Neurotree) |
| Mark P. Brynildsen | post-doc | 2008-2010 | Boston University (Chemistry Tree) |
| Jason H. Yang | post-doc | 2012-2019 | MIT (Computational Biology Tree) |
| Xuejun Zhu | post-doc | 2017-2019 | MIT (Chemistry Tree) |
BETA: Related publications
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Publications
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| Wong F, de la Fuente-Nunez C, Collins JJ. (2023) Leveraging artificial intelligence in the fight against infectious diseases. Science (New York, N.Y.). 381: 164-170 |
| Valeri JA, Soenksen LR, Collins KM, et al. (2023) BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences. Cell Systems. 14: 525-542.e9 |
| Phillips EA, Silverman AD, Joneja A, et al. (2023) Detection of viral RNAs at ambient temperature via reporter proteins produced through the target-splinted ligation of DNA probes. Nature Biomedical Engineering |
| Cabera A, Edelstein HI, Glykofrydis F, et al. (2022) The sound of silence: Transgene silencing in mammalian cell engineering. Cell Systems. 13: 950-973 |
| Sun Q, Vega NM, Cervantes B, et al. (2022) Enhancing nutritional niche and host defenses by modifying the gut microbiome. Molecular Systems Biology. 18: e9933 |
| Warrier T, El Farran C, Zeng Y, et al. (2022) SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates. Nucleic Acids Research |
| Lummertz da Rocha E, Kubaczka C, Sugden WW, et al. (2022) CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development. Nature Cell Biology |
| Lobritz MA, Andrews IW, Braff D, et al. (2021) Increased energy demand from anabolic-catabolic processes drives β-lactam antibiotic lethality. Cell Chemical Biology |
| Zhao EM, Mao AS, de Puig H, et al. (2021) RNA-responsive elements for eukaryotic translational control. Nature Biotechnology |
| Cubillos-Ruiz A, Guo T, Sokolovska A, et al. (2021) Engineering living therapeutics with synthetic biology. Nature Reviews. Drug Discovery |