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| Liu M, Ba Z, Costa-Nunes P, et al. (2017) IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis. The Plant Cell |
| da Costa-Nunes JA, Capitão C, Kozak J, et al. (2014) The AtRAD21.1 and AtRAD21.3 Arabidopsis cohesins play a synergistic role in somatic DNA double strand break damage repair. Bmc Plant Biology. 14: 353 |
| Costa-Nunes P, Kim JY, Hong E, et al. (2014) The cytological and molecular role of domains rearranged methyltransferase3 in RNA-dependent DNA methylation of Arabidopsis thaliana. Bmc Research Notes. 7: 721 |
| Costa-Nunes P, Vitins A, Pontes O. (2014) Connecting the dots of RNA-directed DNA methylation in Arabidopsis thaliana. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 22: 225-40 |
| Pontes O, Vitins A, Ream TS, et al. (2013) Intersection of small RNA pathways in Arabidopsis thaliana sub-nuclear domains. Plos One. 8: e65652 |
| Xie M, Ren G, Costa-Nunes P, et al. (2012) A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. Nucleic Acids Research. 40: 4422-31 |
| Costa-Nunes P, Pontes O, Preuss SB, et al. (2010) Extra views on RNA-dependent DNA methylation and MBD6-dependent heterochromatin formation in nucleolar dominance. Nucleus (Austin, Tex.). 1: 254-9 |
| Earley KW, Pontvianne F, Wierzbicki AT, et al. (2010) Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation. Genes & Development. 24: 1119-32 |
| Pontvianne F, Earley K, Wierzbicki AT, et al. (2010) Histone deacetylase HDA6 suppresses intergenic transcription and mediates crosstalk between DNA methylation and histone modifications in rRNA gene silencing F1000research. 1 |
| Pontes O, Costa-Nunes P, Vithayathil P, et al. (2009) RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway. Molecular Plant. 2: 700-10 |