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Caleb J. Bashor, Ph.D. - Publications

Affiliations: 
2010 Biophysics University of California, San Francisco, San Francisco, CA 
Area:
Cellular Signaling Systems
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14/29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yang X, Rocks JW, Jiang K, Walters AJ, Rai K, Liu J, Nguyen J, Olson SD, Mehta P, Collins JJ, Daringer NM, Bashor CJ. Engineering synthetic phosphorylation signaling networks in human cells. Biorxiv : the Preprint Server For Biology. PMID 37745327 DOI: 10.1101/2023.09.11.557100  0.505
2023 Bragdon MDJ, Patel N, Chuang J, Levien E, Bashor CJ, Khalil AS. Cooperative assembly confers regulatory specificity and long-term genetic circuit stability. Cell. PMID 37552983 DOI: 10.1016/j.cell.2023.07.012  0.313
2023 Farahani PE, Yang X, Mesev EV, Fomby KA, Brumbaugh-Reed EH, Bashor CJ, Nelson CM, Toettcher JE. pYtags enable spatiotemporal measurements of receptor tyrosine kinase signaling in living cells. Elife. 12. PMID 37212240 DOI: 10.7554/eLife.82863  0.621
2019 Yang X, Her J, Bashor CJ. Mammalian signaling circuits from bacterial parts. Nature Chemical Biology. PMID 31844303 DOI: 10.1038/s41589-019-0436-x  0.309
2019 O'Connell RW, Bashor CJ. The Least Mating Pathway: Synthetically Refactoring a Familiar Signaling System for New Applications. Cell. 177: 521-523. PMID 31002793 DOI: 10.1016/j.cell.2019.04.003  0.313
2019 Bashor CJ, Patel N, Choubey S, Beyzavi A, Kondev J, Collins JJ, Khalil AS. Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies. Science (New York, N.Y.). PMID 31000590 DOI: 10.1126/Science.Aau8287  0.392
2018 Bashor CJ, Collins JJ. Understanding Biological Regulation Through Synthetic Biology. Annual Review of Biophysics. PMID 29547341 DOI: 10.1146/Annurev-Biophys-070816-033903  0.35
2016 Gordley RM, Williams RE, Bashor CJ, Toettcher JE, Yan S, Lim WA. Engineering dynamical control of cell fate switching using synthetic phospho-regulons. Proceedings of the National Academy of Sciences of the United States of America. PMID 27821768 DOI: 10.1073/Pnas.1610973113  0.594
2015 Chan CT, Lee JW, Cameron DE, Bashor CJ, Collins JJ. 'Deadman' and 'Passcode' microbial kill switches for bacterial containment. Nature Chemical Biology. PMID 26641934 DOI: 10.1038/Nchembio.1979  0.364
2012 Khalil AS, Lu TK, Bashor CJ, Ramirez CL, Pyenson NC, Joung JK, Collins JJ. A synthetic biology framework for programming eukaryotic transcription functions. Cell. 150: 647-58. PMID 22863014 DOI: 10.1016/J.Cell.2012.05.045  0.313
2012 Thompson KE, Bashor CJ, Lim WA, Keating AE. Synzip protein interaction toolbox: In vitro and in vivo specifications of heterospecific coiled-coil interaction domains Acs Synthetic Biology. 1: 118-129. PMID 22558529 DOI: 10.1021/Sb200015U  0.561
2010 Bashor CJ, Horwitz AA, Peisajovich SG, Lim WA. Rewiring cells: synthetic biology as a tool to interrogate the organizational principles of living systems. Annual Review of Biophysics. 39: 515-37. PMID 20192780 DOI: 10.1146/Annurev.Biophys.050708.133652  0.515
2008 Bashor CJ, Helman NC, Yan S, Lim WA. Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics. Science (New York, N.Y.). 319: 1539-43. PMID 18339942 DOI: 10.1126/Science.1151153  0.676
2006 Bhattacharyya RP, Reményi A, Good MC, Bashor CJ, Falick AM, Lim WA. The Ste5 scaffold allosterically modulates signaling output of the yeast mating pathway. Science (New York, N.Y.). 311: 822-6. PMID 16424299 DOI: 10.1126/Science.1120941  0.576
Low-probability matches (unlikely to be authored by this person)
2014 Keung AJ, Bashor CJ, Kiriakov S, Collins JJ, Khalil AS. Using targeted chromatin regulators to engineer combinatorial and spatial transcriptional regulation. Cell. 158: 110-20. PMID 24995982 DOI: 10.1016/J.Cell.2014.04.047  0.268
2014 Cameron DE, Bashor CJ, Collins JJ. A brief history of synthetic biology. Nature Reviews. Microbiology. 12: 381-90. PMID 24686414 DOI: 10.1038/Nrmicro3239  0.204
2019 Heins ZJ, Mancuso CP, Kiriakov S, Wong BG, Bashor CJ, Khalil AS. Designing Automated, High-throughput, Continuous Cell Growth Experiments Using eVOLVER. Journal of Visualized Experiments : Jove. PMID 31157778 DOI: 10.3791/59652  0.203
2023 Chim LK, Williams IL, Bashor CJ, Mikos AG. Tumor-associated macrophages induce inflammation and drug resistance in a mechanically tunable engineered model of osteosarcoma. Biomaterials. 296: 122076. PMID 36931102 DOI: 10.1016/j.biomaterials.2023.122076  0.189
2023 O'Connell RW, Rai K, Piepergerdes TC, Samra KD, Wilson JA, Lin S, Zhang TH, Ramos EM, Sun A, Kille B, Curry KD, Rocks JW, Treangen TJ, Mehta P, Bashor CJ. Ultra-high throughput mapping of genetic design space. Biorxiv : the Preprint Server For Biology. PMID 36993481 DOI: 10.1101/2023.03.16.532704  0.189
2022 Bashor CJ, Hilton IB, Bandukwala H, Smith DM, Veiseh O. Engineering the next generation of cell-based therapeutics. Nature Reviews. Drug Discovery. PMID 35637318 DOI: 10.1038/s41573-022-00476-6  0.189
2018 Wong BG, Mancuso CP, Kiriakov S, Bashor CJ, Khalil AS. Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER. Nature Biotechnology. PMID 29889214 DOI: 10.1038/nbt.4151  0.188
2002 Schumacher MA, Bashor CJ, Song MH, Otsu K, Zhu S, Parry RJ, Ullman B, Brennan RG. The structural mechanism of GTP stabilized oligomerization and catalytic activation of the Toxoplasma gondii uracil phosphoribosyltransferase. Proceedings of the National Academy of Sciences of the United States of America. 99: 78-83. PMID 11773618 DOI: 10.1073/Pnas.012399599  0.167
2012 Bashor CJ, Collins JJ. Insulating gene circuits from context by RNA processing. Nature Biotechnology. 30: 1061-2. PMID 23138300 DOI: 10.1038/Nbt.2411  0.15
2021 Becce M, Klöckner A, Higgins SG, Penders J, Hachim D, Bashor CJ, Edwards AM, Stevens MM. Assessing the impact of silicon nanowires on bacterial transformation and viability of . Journal of Materials Chemistry. B. PMID 34100486 DOI: 10.1039/d0tb02762f  0.139
2013 Khalil AS, Bashor CJ, Lu IK. Engineering life Scientist. 27.  0.132
2013 Khalil AS, Bashor CJ, Lu TK. Engineering life Scientist. 27.  0.132
2002 Bashor C, Denu JM, Brennan RG, Ullman B. Kinetic mechanism of adenine phosphoribosyltransferase from Leishmania donovani. Biochemistry. 41: 4020-31. PMID 11900545 DOI: 10.1021/Bi0158730  0.089
1999 Bashor CJ, Dalton DA. Effects of exogenous application and stem infusion of ascorbate on soybean (Glycine max) root nodules New Phytologist. 142: 19-26. DOI: 10.1046/j.1469-8137.1999.00370.x  0.087
2020 Ahmed HS, O’Connell R, Bashor C. Recombinase‐mediated Method for Multi‐scale Genomic Rearrangements The Faseb Journal. 34: 1-1. DOI: 10.1096/fasebj.2020.34.s1.01763  0.017
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