| Year |
Citation |
Score |
| Low-probability matches (unlikely to be authored by this person) |
| 2023 |
Fair B, Abad Najar CB, Zhao J, Lozano S, Reilly A, Staley J, Wang J, Li YI. Cryptic splicing mediates genetic and therapeutic perturbation of human gene expression levels. Biorxiv : the Preprint Server For Biology. PMID 37745605 DOI: 10.1101/2023.09.13.557588 |
0.01 |
|
| 2023 |
Buerer L, Clark N, Welch A, Duan C, Taggart A, Townley B, Wang J, Soemedi R, Rong S, Lin CL, Zeng Y, Katolik A, Staley J, Damha M, Mosammaparast N, et al. The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. Research Square. PMID 37398028 DOI: 10.21203/rs.3.rs-2931976/v1 |
0.01 |
|
| 2022 |
Zeng Y, Fair BJ, Zeng H, Krishnamohan A, Hou Y, Hall JM, Ruthenburg AJ, Li YI, Staley JP. Profiling lariat intermediates reveals genetic determinants of early and late co-transcriptional splicing. Molecular Cell. PMID 36435176 DOI: 10.1016/j.molcel.2022.11.004 |
0.01 |
|
| 2019 |
Toroney R, Nielsen KH, Staley JP. Termination of pre-mRNA splicing requires that the ATPase and RNA unwindase Prp43p acts on the catalytic snRNA U6. Genes & Development. PMID 31558568 DOI: 10.1101/Gad.328294.119 |
0.01 |
|
| 2017 |
He Y, Staley JP, Andersen GR, Nielsen KH. Structure of DEAH/RHA ATPase Prp43p bound to RNA implicates a pair of hairpins and motif Va in translocation along RNA. Rna (New York, N.Y.). PMID 28416566 DOI: 10.1261/Rna.060954.117 |
0.01 |
|
| 2016 |
Shao Y, Huang H, Qin D, Li NS, Koide A, Staley JP, Koide S, Kossiakoff AA, Piccirilli JA. Specific Recognition of a Single-stranded RNA Sequence by a Synthetic Antibody Fragment. Journal of Molecular Biology. PMID 27593161 DOI: 10.1016/J.Jmb.2016.08.029 |
0.01 |
|
| 2016 |
Soucek S, Zeng Y, Bellur DL, Bergkessel M, Morris KJ, Deng Q, Duong D, Seyfried NT, Guthrie C, Staley JP, Fasken MB, Corbett AH. The Evolutionarily-conserved Polyadenosine RNA Binding Protein, Nab2, Cooperates with Splicing Machinery to Regulate the Fate of pre-mRNA. Molecular and Cellular Biology. PMID 27528618 DOI: 10.1128/Mcb.00402-16 |
0.01 |
|
| 2016 |
Piccirilli JA, Staley JP. Reverse transcriptases lend a hand in splicing catalysis. Nature Structural & Molecular Biology. 23: 507-509. PMID 27273636 DOI: 10.1038/Nsmb.3242 |
0.01 |
|
| 2016 |
Ranoa DR, Parekh AD, Pitroda SP, Huang X, Darga T, Wong AC, Huang L, Andrade J, Staley JP, Satoh T, Akira S, Weichselbaum RR, Khodarev NN. Cancer therapies activate RIG-I-like receptor pathway through endogenous non-coding RNAs. Oncotarget. PMID 27034163 DOI: 10.18632/oncotarget.8420 |
0.01 |
|
| 2016 |
Semlow DR, Blanco MR, Walter NG, Staley JP. Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites. Cell. 164: 985-98. PMID 26919433 DOI: 10.1016/J.Cell.2016.01.025 |
0.01 |
|
| 2015 |
Qin D, Huang L, Wlodaver A, Andrade J, Staley JP. Sequencing of lariat termini in S. cerevisiae reveals 5' splice sites, branch points, and novel splicing events. Rna (New York, N.Y.). PMID 26647463 DOI: 10.1261/Rna.052829.115 |
0.01 |
|
| 2015 |
Liu Y, Chen X, Qin B, Zhao K, Zhao Q, Staley JP, Zhao C. Knocking Down Snrnp200 Initiates Demorphogenesis of Rod Photoreceptors in Zebrafish. Journal of Ophthalmology. 2015: 816329. PMID 26137319 DOI: 10.1155/2015/816329 |
0.01 |
|
| 2014 |
Fica SM, Mefford MA, Piccirilli JA, Staley JP. Evidence for a group II intron-like catalytic triplex in the spliceosome. Nature Structural & Molecular Biology. 21: 464-71. PMID 24747940 DOI: 10.1038/Nsmb.2815 |
0.01 |
|
| 2014 |
Li NS, Tuttle N, Staley JP, Piccirilli JA. Synthesis and incorporation of the phosphoramidite derivative of 2'-O-photocaged 3'-s-thioguanosine into oligoribonucleotides: substrate for probing the mechanism of RNA catalysis. The Journal of Organic Chemistry. 79: 3647-52. PMID 24635216 DOI: 10.1021/Jo4028374 |
0.01 |
|
| 2014 |
Wlodaver AM, Staley JP. The DExD/H-box ATPase Prp2p destabilizes and proofreads the catalytic RNA core of the spliceosome. Rna (New York, N.Y.). 20: 282-94. PMID 24442613 DOI: 10.1261/rna.042598.113 |
0.01 |
|
| 2013 |
Fica SM, Tuttle N, Novak T, Li NS, Lu J, Koodathingal P, Dai Q, Staley JP, Piccirilli JA. RNA catalyses nuclear pre-mRNA splicing. Nature. 503: 229-34. PMID 24196718 DOI: 10.1038/Nature12734 |
0.01 |
|
| 2013 |
Koodathingal P, Staley JP. Splicing fidelity: DEAD/H-box ATPases as molecular clocks. Rna Biology. 10: 1073-9. PMID 23770752 DOI: 10.4161/rna.25245 |
0.01 |
|
| 2013 |
Schellenberg MJ, Wu T, Ritchie DB, Fica S, Staley JP, Atta KA, LaPointe P, MacMillan AM. A conformational switch in PRP8 mediates metal ion coordination that promotes pre-mRNA exon ligation. Nature Structural & Molecular Biology. 20: 728-34. PMID 23686287 DOI: 10.1038/Nsmb.2556 |
0.01 |
|
| 2013 |
Kannan R, Hartnett S, Voelker RB, Berglund JA, Staley JP, Baumann P. Intronic sequence elements impede exon ligation and trigger a discard pathway that yields functional telomerase RNA in fission yeast. Genes & Development. 27: 627-38. PMID 23468430 DOI: 10.1101/gad.212738.112 |
0.01 |
|
| 2012 |
Nielsen KH, Staley JP. Spliceosome activation: U4 is the path, stem I is the goal, and Prp8 is the keeper. Let's cheer for the ATPase Brr2! Genes & Development. 26: 2461-7. PMID 23154979 DOI: 10.1101/Gad.207514.112 |
0.01 |
|
| 2012 |
Semlow DR, Staley JP. Staying on message: ensuring fidelity in pre-mRNA splicing. Trends in Biochemical Sciences. 37: 263-73. PMID 22564363 DOI: 10.1016/j.tibs.2012.04.001 |
0.01 |
|
| 2012 |
Kim Guisbert KS, Zhang Y, Flatow J, Hurtado S, Staley JP, Lin S, Sontheimer EJ. Meiosis-induced alterations in transcript architecture and noncoding RNA expression in S. cerevisiae. Rna (New York, N.Y.). 18: 1142-53. PMID 22539527 DOI: 10.1261/Rna.030510.111 |
0.01 |
|
| 2010 |
Koodathingal P, Novak T, Piccirilli JA, Staley JP. The DEAH box ATPases Prp16 and Prp43 cooperate to proofread 5' splice site cleavage during pre-mRNA splicing. Molecular Cell. 39: 385-95. PMID 20705241 DOI: 10.1016/J.Molcel.2010.07.014 |
0.01 |
|
| 2010 |
Mayas RM, Maita H, Semlow DR, Staley JP. Spliceosome discards intermediates via the DEAH box ATPase Prp43p. Proceedings of the National Academy of Sciences of the United States of America. 107: 10020-5. PMID 20463285 DOI: 10.1073/Pnas.0906022107 |
0.01 |
|
| 2009 |
Zhao C, Bellur DL, Lu S, Zhao F, Grassi MA, Bowne SJ, Sullivan LS, Daiger SP, Chen LJ, Pang CP, Zhao K, Staley JP, Larsson C. Autosomal-dominant retinitis pigmentosa caused by a mutation in SNRNP200, a gene required for unwinding of U4/U6 snRNAs. American Journal of Human Genetics. 85: 617-27. PMID 19878916 DOI: 10.1016/J.Ajhg.2009.09.020 |
0.01 |
|
| 2009 |
Mefford MA, Staley JP. Evidence that U2/U6 helix I promotes both catalytic steps of pre-mRNA splicing and rearranges in between these steps. Rna (New York, N.Y.). 15: 1386-97. PMID 19458033 DOI: 10.1261/Rna.1582609 |
0.01 |
|
| 2009 |
Staley JP, Woolford JL. Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines. Current Opinion in Cell Biology. 21: 109-18. PMID 19167202 DOI: 10.1016/j.ceb.2009.01.003 |
0.01 |
|
| 2008 |
Anderson AM, Staley JP. Long-distance splicing. Proceedings of the National Academy of Sciences of the United States of America. 105: 6793-4. PMID 18474864 DOI: 10.1073/pnas.0803068105 |
0.01 |
|
| 2008 |
Bellare P, Small EC, Huang X, Wohlschlegel JA, Staley JP, Sontheimer EJ. A role for ubiquitin in the spliceosome assembly pathway. Nature Structural & Molecular Biology. 15: 444-51. PMID 18425143 DOI: 10.1038/Nsmb.1401 |
0.01 |
|
| 2007 |
Hilliker AK, Mefford MA, Staley JP. U2 toggles iteratively between the stem IIa and stem IIc conformations to promote pre-mRNA splicing. Genes & Development. 21: 821-34. PMID 17403782 DOI: 10.1101/Gad.1536107 |
0.01 |
|
| 2006 |
Mayas RM, Staley JP. DEAD on. Nature Structural & Molecular Biology. 13: 954-5. PMID 17082789 DOI: 10.1038/nsmb1106-954 |
0.01 |
|
| 2006 |
Small EC, Leggett SR, Winans AA, Staley JP. The EF-G-like GTPase Snu114p regulates spliceosome dynamics mediated by Brr2p, a DExD/H box ATPase. Molecular Cell. 23: 389-99. PMID 16885028 DOI: 10.1016/J.Molcel.2006.05.043 |
0.01 |
|
| 2006 |
Mayas RM, Maita H, Staley JP. Exon ligation is proofread by the DExD/H-box ATPase Prp22p. Nature Structural & Molecular Biology. 13: 482-90. PMID 16680161 DOI: 10.1038/Nsmb1093 |
0.01 |
|
| 2006 |
Leeds NB, Small EC, Hiley SL, Hughes TR, Staley JP. The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis. Molecular and Cellular Biology. 26: 513-22. PMID 16382143 DOI: 10.1128/Mcb.26.2.513-522.2006 |
0.01 |
|
| 2004 |
Hilliker AK, Staley JP. Multiple functions for the invariant AGC triad of U6 snRNA. Rna (New York, N.Y.). 10: 921-8. PMID 15146076 DOI: 10.1261/Rna.7310704 |
0.01 |
|
| 2002 |
Staley JP. Hanging on to the branch Nature Structural Biology. 9: 5-7. PMID 11753425 DOI: 10.1038/nsb0102-5 |
0.01 |
|
| Hide low-probability matches. |