Alison K. Hottes, Ph.D.

bacterial genetic regulation

Harley H. McAdams	grad student	2005	Stanford
(An analysis of transcriptional control in the Caulobacter crescentus metabolic and cell cycle networks.)

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Hottes AK, Tavazoie S. (2011) Microarray-based genetic footprinting strategy to identify strain improvement genes after competitive selection of transposon libraries. Methods in Molecular Biology (Clifton, N.J.). 765: 83-97
Vora T, Hottes AK, Tavazoie S. (2009) Protein occupancy landscape of a bacterial genome. Molecular Cell. 35: 247-53
McGrath PT, Lee H, Zhang L, et al. (2007) High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. Nature Biotechnology. 25: 584-92
Chen JC, Hottes AK, McAdams HH, et al. (2006) Cytokinesis signals truncation of the PodJ polarity factor by a cell cycle-regulated protease. The Embo Journal. 25: 377-86
Hottes AK, Shapiro L, McAdams HH. (2005) DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus. Molecular Microbiology. 58: 1340-53
Chen SL, Lee W, Hottes AK, et al. (2004) Codon usage between genomes is constrained by genome-wide mutational processes. Proceedings of the National Academy of Sciences of the United States of America. 101: 3480-5
Hottes AK, Meewan M, Yang D, et al. (2004) Transcriptional profiling of Caulobacter crescentus during growth on complex and minimal media. Journal of Bacteriology. 186: 1448-61