Peter L. Freddolino, Ph.D.
Affiliations: | 2009 | University of Illinois, Urbana-Champaign, Urbana-Champaign, IL |
Area:
theoretical biophysicsGoogle:
"Peter Freddolino"Mean distance: 8.65 | S | N | B | C | P |
Parents
Sign in to add mentor| Klaus Schulten | grad student | 2009 | UIUC | |
| (Application of all-atom and coarse-grained molecular dynamics simulations to long timescale structural transitions of proteins.) | ||||
| Saeed Tavazoie | post-doc | University of Michigan Medical School | ||
BETA: Related publications
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Publications
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| Ketcham A, Freddolino PL, Tavazoie S. (2022) Intracellular acidification is a hallmark of thymineless death in E. coli. Plos Genetics. 18: e1010456 |
| Freddolino PL, Amemiya HM, Goss TJ, et al. (2022) Correction: Dynamic landscape of protein occupancy across the Escherichia coli chromosome. Plos Biology. 20: e3001557 |
| Freddolino PL, Amemiya HM, Goss TJ, et al. (2021) Dynamic landscape of protein occupancy across the Escherichia coli chromosome. Plos Biology. 19: e3001306 |
| Wolfe MB, Schagat TL, Paulsen MT, et al. (2020) Principles of mRNA control by human PUM proteins elucidated from multi-modal experiments and integrative data analysis. Rna (New York, N.Y.) |
| Walker DM, Freddolino PL, Harshey RM. (2020) A Well-Mixed E. coli Genome: Widespread Contacts Revealed by Tracking Mu Transposition. Cell |
| Barnier C, Piersimoni L, Price J, et al. (2020) A Unified Workflow to Identify Quaternary Structures and Changes in Protein-protein Interactions from Crosslinking-based Mass Spectrometry Biophysical Journal. 118: 357a |
| Zhou N, Jiang Y, Bergquist TR, et al. (2019) The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology. 20: 244 |
| Sjulstok E, Solov'yov IA, Freddolino PL. (2019) Applications of molecular modeling to flavoproteins: Insights and challenges. Methods in Enzymology. 620: 277-314 |
| Kroner GM, Wolfe MB, Freddolino PL. (2018) Lrp regulates one-third of the genome via direct, cooperative, and indirect routes. Journal of Bacteriology |
| T Abshire E, Chasseur J, Bohn JA, et al. (2018) The structure of human Nocturnin reveals a conserved ribonuclease domain that represses target transcript translation and abundance in cells. Nucleic Acids Research |