Mehmet S. Apaydin, Ph.D.
Affiliations: | 2004 | Stanford University, Palo Alto, CA |
Area:
BioinformaticsGoogle:
"Mehmet Apaydin"Mean distance: 10.24 | S | N | B | C | P |
Parents
Sign in to add mentorDouglas L. Brutlag | grad student | 2004 | Stanford | |
(Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion.) |
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Publications
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Çetinkaya Ş, Ekren ŞN, Apaydin MS. (2016) Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments Rairo - Operations Research. 50: 341-349 |
Akhmedov M, Çatay B, Apaydın MS. (2015) Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. Journal of Bioinformatics and Computational Biology. 1550020 |
Cavuşlar G, Çatay B, Apaydın MS. (2012) A tabu search approach for the NMR protein structure-based assignment problem. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1621-8 |
Erdoǧan H, Apaydin MS. (2012) Incorporating amino acid typing into Nuclear Magnetic Resonance protein structure-based assignments Journal of Proteomics and Bioinformatics. 5: 116-121 |
Apaydin MS, Çatay B, Patrick N, et al. (2011) NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. The Computer Journal. 54: 708-716 |
Apaydin MS, Conitzer V, Donald BR. (2008) Structure-based protein NMR assignments using native structural ensembles. Journal of Biomolecular Nmr. 40: 263-76 |
Chiang TH, Apaydin MS, Brutlag DL, et al. (2007) Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 578-93 |
Chiang TH, Apaydin MS, Brutlag DL, et al. (2006) Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 410-424 |
Apaydin MS, Brutlag DL, Guestrin C, et al. (2004) Stochastic conformational roadmaps for computing ensemble properties of molecular motion Springer Tracts in Advanced Robotics. 7: 131-147 |
Apaydin MS, Brutlag DL, Guestrin C, et al. (2003) Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 257-81 |