Rhiju Das
Affiliations: | Biochemistry and Physics | Stanford University, Palo Alto, CA |
Area:
predictive understanding of how biopolymer sequences code for biopolymer structures, with an initial focus on RNAWebsite:
http://www.stanford.edu/~rhiju/index.htmlGoogle:
"Rhiju Das"Bio:
http://www.stanford.edu/~rhiju/rhiju_cv.pdf
Mean distance: (not calculated yet) | S | N | B | C | P |
Cross-listing: Computational Biology Tree
Parents
Sign in to add mentor| Sebastian Doniach | grad student | 2001-2005 | Stanford (Physics Tree) | |
| Daniel Herschlag | grad student | 2001-2005 | Department of Biochemistry Stanford University School of Medicine | |
| (Visualizing Forces and Folds of Self-Assembling RNA Molecules) | ||||
| David Baker | post-doc | 2005-2008 | University of Washington | |
BETA: Related publications
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Publications
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| Mulvaney T, Kretsch RC, Elliott L, et al. (2023) CASP15 cryo-EM protein and RNA targets: Refinement and analysis using experimental maps. Proteins. 91: 1935-1951 |
| Das R, Kretsch RC, Simpkin AJ, et al. (2023) Assessment of three-dimensional RNA structure prediction in CASP15. Proteins |
| Mulvaney T, Kretsch RC, Elliott L, et al. (2023) CASP15 cryoEM protein and RNA targets: refinement and analysis using experimental maps. Biorxiv : the Preprint Server For Biology |
| Kretsch RC, Andersen ES, Bujnicki JM, et al. (2023) RNA target highlights in CASP15: Evaluation of predicted models by structure providers. Proteins |
| Kryshtafovych A, Antczak M, Szachniuk M, et al. (2023) New prediction categories in CASP15. Proteins |
| Das R, Kretsch RC, Simpkin A, et al. (2023) Assessment of three-dimensional RNA structure prediction in CASP15. Biorxiv : the Preprint Server For Biology |
| Watkins AM, Das R. (2023) RNA 3D Modeling with FARFAR2, Online. Methods in Molecular Biology (Clifton, N.J.). 2586: 233-249 |
| Wayment-Steele HK, Kladwang W, Watkins AM, et al. (2022) Deep learning models for predicting RNA degradation via dual crowdsourcing. Nature Machine Intelligence. 4: 1174-1184 |
| Wayment-Steele HK, Kladwang W, Strom AI, et al. (2022) RNA secondary structure packages evaluated and improved by high-throughput experiments. Nature Methods |
| Kim DS, Watkins A, Bidstrup E, et al. (2022) Three-dimensional structure-guided evolution of a ribosome with tethered subunits. Nature Chemical Biology |