Dmytro Kozakov, Ph.D.
Affiliations: | 2007 | Boston University, Boston, MA, United States |
Area:
Biomedical EngineeringGoogle:
"Dmytro Kozakov"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Sandor Vajda | grad student | 2007 | Boston University | |
| (Multistage approach to protein -protein interaction prediction.) | ||||
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Publications
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| Desta IT, Porter KA, Xia B, et al. (2020) Performance and Its Limits in Rigid Body Protein-Protein Docking. Structure (London, England : 1993) |
| Alekseenko A, Ignatov M, Jones G, et al. (2020) Protein-Protein and Protein-Peptide Docking with ClusPro Server. Methods in Molecular Biology (Clifton, N.J.). 2165: 157-174 |
| Padhorny D, Porter KA, Ignatov M, et al. (2020) ClusPro in rounds 38-45 of CAPRI: Toward combining template-based methods with free docking. Proteins |
| Khramushin A, Marcu O, Alam N, et al. (2019) Modeling beta sheet peptide-protein interactions: Rosetta FlexPepDock in CAPRI Rounds 38-45. Proteins |
| Kotelnikov S, Alekseenko A, Liu C, et al. (2019) Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4. Journal of Computer-Aided Molecular Design |
| Alekseenko A, Kotelnikov S, Ignatov M, et al. (2019) ClusPro LigTBM: Automated Template-Based Small Molecule Docking. Journal of Molecular Biology |
| Zhong M, Lynch AJ, Muellers SN, et al. (2019) Interaction Energetics and Druggability of the Protein-Protein Interaction between Kelch-like ECH-associated Protein 1 (KEAP1) and Nuclear Factor, Erythroid 2 Like 2 (Nrf2). Biochemistry |
| Lensink MF, Brysbaert G, Nadzirin N, et al. (2019) Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment. Proteins |
| Porter KA, Padhorny D, Desta I, et al. (2019) Template-Based Modeling by ClusPro in CASP13 and the Potential for Using Co-evolutionary Information in Docking. Proteins |
| Yueh C, Rettenmaier J, Xia B, et al. (2019) Kinase Atlas: Druggability Analysis of Potential Allosteric Sites in Kinases. Journal of Medicinal Chemistry |