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Matthew R. Henn, Ph.D.

Affiliations: 
2003 University of California, Berkeley, Berkeley, CA, United States 
Area:
Microbiology Biology, Ecology Biology, Biogeochemistry
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Ignacio H. Chapela grad student 2003 UC Berkeley
 (Biochemical basis and ecological implications of stable carbon and nitrogen isotopic fractionation by basidiomycete fungi.)

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Publications

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McGovern BH, Ford CB, Henn MR, et al. (2020) SER-109, an Investigational Microbiome Drug to Reduce Recurrence after Clostridioides difficile infection: Lessons Learned from a Phase 2 Trial. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America
Dugan VG, Emrich SJ, Giraldo-Calderón GI, et al. (2014) Standardized metadata for human pathogen/vector genomic sequences. Plos One. 9: e99979
Yang X, Charlebois P, Macalalad A, et al. (2013) V-Phaser 2: variant inference for viral populations. Bmc Genomics. 14: 674
Labrie SJ, Frois-Moniz K, Osburne MS, et al. (2013) Genomes of marine cyanopodoviruses reveal multiple origins of diversity. Environmental Microbiology. 15: 1356-76
Newman RM, Kuntzen T, Weiner B, et al. (2013) Whole genome pyrosequencing of rare hepatitis C virus genotypes enhances subtype classification and identification of naturally occurring drug resistance variants. The Journal of Infectious Diseases. 208: 17-31
Malmstrom RR, Rodrigue S, Huang KH, et al. (2013) Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. The Isme Journal. 7: 184-98
Duong V, Simmons C, Gavotte L, et al. (2013) Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 15: 59-68
Yang X, Charlebois P, Gnerre S, et al. (2012) De novo assembly of highly diverse viral populations. Bmc Genomics. 13: 475
Parameswaran P, Charlebois P, Tellez Y, et al. (2012) Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversity. Journal of Virology. 86: 8546-58
Macalalad AR, Zody MC, Charlebois P, et al. (2012) Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data. Plos Computational Biology. 8: e1002417
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