Jason D. Fernandes, Ph.D.

Affiliations: 
2013 Pharmaceutical Sciences and Pharmacogenomics University of California, San Francisco, San Francisco, CA 
Area:
Evolution and Development Biology, Virology Biology
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"Jason Fernandes"
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Parents

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Alan D. Frankel grad student 2013 UCSF
 (The Selfish Organization of the Overlapping HIV -1 Genes tat and rev.)
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Publications

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Safari M, Jayaraman B, Yang S, et al. (2022) Functional and structural segregation of overlapping helices in HIV-1. Elife. 11
Fernandes JD, Hinrichs AS, Clawson H, et al. (2020) The UCSC SARS-CoV-2 Genome Browser. Nature Genetics
Okhovat M, Nevonen KA, Davis BA, et al. (2020) Co-option of the lineage-specific retrotransposon in the gibbon genome. Proceedings of the National Academy of Sciences of the United States of America
Fernandes JD, Zamudio-Hurtado A, Clawson H, et al. (2020) The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families. Mobile Dna. 11: 13
Jayaraman B, Fernandes JD, Yang S, et al. (2019) Highly Mutable Linker Regions Regulate HIV-1 Rev Function and Stability. Scientific Reports. 9: 5139
Fernandes JD, Faust TB, Strauli NB, et al. (2016) Functional Segregation of Overlapping Genes in HIV. Cell. 167: 1762-1773.e12
Jayaraman B, Smith AM, Fernandes JD, et al. (2016) Oligomeric viral proteins: small in size, large in presence. Critical Reviews in Biochemistry and Molecular Biology. 1-16
Fernandes JD, Booth DS, Frankel AD. (2016) A structurally plastic ribonuceloprotein complex mediates post-transcriptional gene regulation in HIV-1. Wiley Interdisciplinary Reviews. Rna
Fernandes J, Jayaraman B, Frankel A. (2012) The HIV-1 Rev response element: an RNA scaffold that directs the cooperative assembly of a homo-oligomeric ribonucleoprotein complex. Rna Biology. 9: 6-11
Jäger S, Cimermancic P, Gulbahce N, et al. (2012) Global landscape of HIV-human protein complexes. Nature. 481: 365-70
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