Kevin Karplus
Affiliations: | University of California, Santa Cruz, Santa Cruz, CA, United States |
Area:
Bioinformatics Biology, BiochemistryGoogle:
"Kevin Karplus"Mean distance: (not calculated yet)
Cross-listing: Computer Science Tree
Children
Sign in to add trainee| Melissa S. Cline | grad student | 2000 | UC Santa Cruz |
| Christian L. Barrett | grad student | 2001 | UC Santa Cruz |
| Rachel Karchin | grad student | 2003 | UC Santa Cruz |
| Firas Khatib | grad student | 2008 | UC Santa Cruz |
| Josue A. Samayoa | grad student | 2009 | UC Santa Cruz |
| George Shackelford | grad student | 2010 | UC Santa Cruz |
| Grant Thiltgen | grad student | 2010 | UC Santa Cruz |
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Publications
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| Draper JL, Hansen LM, Bernick DL, et al. (2017) Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains. Mbio. 8 |
| Schreiber J, Karplus K. (2015) Analysis of nanopore data using hidden Markov models. Bioinformatics (Oxford, England). 31: 1897-903 |
| Bernick DL, Karplus K, Lui LM, et al. (2012) Complete genome sequence of Pyrobaculum oguniense. Standards in Genomic Sciences. 6: 336-45 |
| Sievers F, Wilm A, Dineen D, et al. (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology. 7: 539 |
| Samayoa J, Yildiz FH, Karplus K. (2011) Identification of prokaryotic small proteins using a comparative genomic approach. Bioinformatics (Oxford, England). 27: 1765-71 |
| Fonseca R, Winter P, Karplus K. (2011) Protein packing quality using Delaunay complexes Proceedings - 2011 8th International Symposium On Voronoi Diagrams in Science and Engineering, Isvd 2011. 117-122 |
| Madera M, Calmus R, Thiltgen G, et al. (2010) Improving protein secondary structure prediction using a simple k-mer model. Bioinformatics (Oxford, England). 26: 596-602 |
| Krieger E, Joo K, Lee J, et al. (2009) Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8. Proteins. 77: 114-22 |
| Archie JG, Paluszewski M, Karplus K. (2009) Applying Undertaker to quality assessment. Proteins. 77: 191-5 |
| Karplus K. (2009) SAM-T08, HMM-based protein structure prediction. Nucleic Acids Research. 37: W492-7 |