J. Andrew McCammon
Affiliations: | University of California, San Diego, La Jolla, CA |
Area:
Statistical mechanics and computational chemistry, with applications to biological systemsWebsite:
http://www-chem.ucsd.edu/faculty/profiles/mccammon_james_a.htmlGoogle:
"J. Andrew McCammon"Bio:
http://www.nasonline.org/member-directory/members/43389.html
http://americanhistory.si.edu/collections/comphist/mccammon.htm
Mean distance: (not calculated yet) | S | N | B | C | P |
Cross-listing: Computational Biology Tree
Parents
Sign in to add mentor| John M. Deutch | grad student | 1976 | Harvard | |
| (Hydrodynamics of biopolymers) | ||||
| Martin Karplus | post-doc | 1976-1978 | Harvard | |
Children
Sign in to add trainee| Peter Sims | research assistant | UCSD | |
| Carlos Xavier Hernández | research assistant | 2012-2012 | UCSD |
| William R Cannon | grad student | UCSD | |
| Regis Pomes | grad student | University of Houston | |
| Mia A. Rosenfeld | grad student | ||
| John Tanner | grad student | UCSD (Neurotree) | |
| Roberto Dias Lins | grad student | 1995-1999 | UCSD |
| Kaihsu Tai | grad student | 2002 | UCSD (Computational Biology Tree) |
| Eric David Scheeff | grad student | 2003 | UCSD |
| Jennifer M. Bui | grad student | 2005 | UCSD (Computational Biology Tree) |
| Dennis Stanley Law | grad student | 2005 | UCSD |
| Alexander Luke Perryman | grad student | 2005 | UCSD |
| Julie Schames Pressman | grad student | 2005 | UCSD |
| Grace Yang | grad student | 2005 | UCSD |
| Thuy Linh Dinh-Truong | grad student | 2006 | UCSD |
| John Mongan | grad student | 2006 | UCSD |
| Jessica M. Swanson | grad student | 2006 | UCSD |
| David Cerutti | grad student | 2007 | UCSD |
| Yuhui Cheng | grad student | 2007 | UCSD (Computational Biology Tree) |
| David Minh | grad student | 2007 | UCSD |
| Arneh Babakhani | grad student | 2009 | UCSD (Computational Biology Tree) |
| Jacob Devin Durrant | grad student | 2010 | UCSD |
| Mikolai Fajer | grad student | 2011 | UCSD |
| Patricia M. Bauler | grad student | 2012 | UCSD (Computational Biology Tree) |
| William Sinko | grad student | 2012 | UCSD |
| Paul M. Gasper | grad student | 2013 | UCSD |
| Mehrnoosh Arrar | grad student | 2014 | UCSD (Computational Biology Tree) |
| Patrick G. Blachly | grad student | 2014 | UCSD (Computational Biology Tree) |
| Christopher T. Lee | grad student | 2013-2019 | UCSD |
| Frank L. Brown | post-doc | ||
| Richard H. Henchman | post-doc | UCSD | |
| Sara E. Nichols | post-doc | University of California at San Diego, Howard Hughes Medical Institute | |
| Rebecca C Wade | post-doc | (Computational Biology Tree) | |
| Peter M. Kekenes-Huskey | post-doc | 2010- | UCSD |
| Scott Hayes Northrup | post-doc | 1979-1980 | University of Houston |
| Jeffry D. Madura | post-doc | 1986-1990 | University of Houston |
| Thanh N. Truong | post-doc | 1990-1992 | University of Utah |
| James M. Briggs | post-doc | 1990-1994 | University of Houston, TX |
| Michael K. Gilson | post-doc | 1991-1994 | University of Houston |
| Wolfgang Weber | post-doc | 1997-1999 | |
| Heather A. Carlson | post-doc | 1997-2000 | UCSD |
| Nathan Baker | post-doc | 2001-2002 | UCSD (Cell Biology Tree) |
| Yingkai Zhang | post-doc | 2000-2003 | UCSD |
| Jens E. Nielsen | post-doc | 2001-2003 | Pharmacology, UCSD |
| Joachim Dzubiella | post-doc | 2004-2006 | UCSD |
| Cameron Mura | post-doc | 2003-2007 | UCSD |
| Xiaolin Cheng | post-doc | 2004-2008 | UCSD |
| Ilja V. Khavrutskii | post-doc | 2007-2009 | UCSD |
| Giulia Palermo | post-doc | 2016-2018 | UCSD |
| Fiona Lynn Kearns | post-doc | 2020-2025 | UCSD |
| Jung-Hsin Lin | research scientist | 2000-2002 | UCSD |
BETA: Related publications
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Publications
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| Hock MT, Teitgen AE, McCabe KJ, et al. (2023) Multiscale computational modeling of the effects of 2'-deoxy-ATP on cardiac muscle calcium handling. Journal of Applied Physics. 134: 074905 |
| Miao Y, Chang CA, Zhu W, et al. (2023) Editorial: Mechanisms, thermodynamics and kinetics of ligand binding revealed from molecular simulations and machine learning. Frontiers in Molecular Biosciences. 10: 1139471 |
| Laughlin TG, Deep A, Prichard AM, et al. (2022) Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature. 608: 429-435 |
| Ahn SH, Ojha AA, Amaro RE, et al. (2021) Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling. Journal of Chemical Theory and Computation. 17: 7938-7951 |
| Sztain T, Ahn SH, Bogetti AT, et al. (2021) A glycan gate controls opening of the SARS-CoV-2 spike protein. Nature Chemistry |
| Sztain T, Amaro R, McCammon JA. (2021) Elucidation of Cryptic and Allosteric Pockets within the SARS-CoV-2 Main Protease. Journal of Chemical Information and Modeling |
| Sztain T, Ahn SH, Bogetti AT, et al. (2021) A glycan gate controls opening of the SARS-CoV-2 spike protein. Biorxiv : the Preprint Server For Biology |
| Seitz C, Casalino L, Konecny R, et al. (2020) Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase. Biophysical Journal |
| McCabe KJ, Aboelkassem Y, Teitgen AE, et al. (2020) Predicting the effects of dATP on cardiac contraction using multiscale modeling of the sarcomere. Archives of Biochemistry and Biophysics. 108582 |
| Misson LE, Mindrebo JT, Davis TD, et al. (2020) Interfacial plasticity facilitates high reaction rate of FAS malonyl-CoA:ACP transacylase, FabD. Proceedings of the National Academy of Sciences of the United States of America |