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Daniel M. Zuckerman

Affiliations: 
University of Pittsburgh, Pittsburgh, PA, United States 
Area:
General Biophysics
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"Daniel Zuckerman"
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Parents

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Thomas Woolf grad student Johns Hopkins (Chemistry Tree)

Children

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Edward Lyman grad student University of Pittsburgh

Collaborators

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Jonathan A Flores collaborator 2018- OHSU (Chemistry Tree)
Joshua L. Adelman collaborator 2009-2015 University of Pittsburgh (Chemistry Tree)
BETA: Related publications

Publications

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Zuckerman DM, George A. (2024) Bayesian Mechanistic Inference, Statistical Mechanics, and a New Era for Monte Carlo. Journal of Chemical Theory and Computation
Bogetti AT, Leung JMG, Russo JD, et al. (2023) A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]. Living Journal of Computational Molecular Science. 5
Russo JD, Zhang S, Leung JMG, et al. (2022) WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications. Journal of Chemical Theory and Computation
Suárez E, Wiewiora RP, Wehmeyer C, et al. (2021) What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models. Journal of Chemical Theory and Computation
Copperman J, Zuckerman DM. (2020) Accelerated estimation of long-timescale kinetics from weighted ensemble simulation via non-Markovian "microbin" analysis. Journal of Chemical Theory and Computation
Flores JA, Haddad BG, Dolan KA, et al. (2020) Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å. Nature Communications. 11: 4331
Bisignano P, Lee MA, George A, et al. (2020) A kinetic mechanism for enhanced selectivity of membrane transport. Plos Computational Biology. 16: e1007789
George A, Bisignano P, Rosenberg JM, et al. (2020) A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms. Plos Computational Biology. 16: e1007884
Chen KY, Zuckerman DM, Nelson PC. (2020) Stochastic Simulation to Visualize Gene Expression and Error Correction in Living Cells The Biophysicist. 1
Aristoff D, Zuckerman DM. (2020) Optimizing Weighted Ensemble Sampling of Steady States Multiscale Modeling & Simulation. 18: 646-673
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