Sara Y. Cheng
Affiliations: | Chemistry | University of California, Berkeley, Berkeley, CA, United States |
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| An D, Cheng SY, Head-Gordon T, et al. (2021) Convergence of stochastic-extended Lagrangian molecular dynamics method for polarizable force field simulation Journal of Computational Physics. 438: 110338 |
| Cheng SY, Cao Y, Rouzbehani M, et al. (2020) Data showing the lipid conformations and membrane binding behaviors of beta-amyloid fibrils in phase-separated cholesterol-enriched lipid domains with and without glycolipid and oxidized cholesterol from coarse-grained molecular dynamics simulations. Data in Brief. 30: 105496 |
| Cheng SY, Cao Y, Rouzbehani M, et al. (2020) Coarse-grained MD simulations reveal beta-amyloid fibrils of various sizes bind to interfacial liquid-ordered and liquid-disordered regions in phase separated lipid rafts with diverse membrane-bound conformational states. Biophysical Chemistry. 260: 106355 |
| Jing Z, Liu C, Cheng SY, et al. (2019) Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications. Annual Review of Biophysics |
| Cheng SY, Chou G, Buie C, et al. (2016) Data supporting beta-amyloid dimer structural transitions and protein-lipid interactions on asymmetric lipid bilayer surfaces using MD simulations on experimentally derived NMR protein structures. Data in Brief. 7: 658-72 |
| Cheng SY, Chou G, Buie C, et al. (2016) Maximally Asymmetric Transbilayer Distribution of Anionic Lipids Alters the Structure and Interaction with Lipids of an Amyloidogenic Protein Dimer Bound to the Membrane Surface. Chemistry and Physics of Lipids |
| Cheng KH, Qiu L, Cheng SY, et al. (2015) Lipid insertion domain unfolding regulates protein orientational transition behavior in a lipid bilayer. Biophysical Chemistry. 206: 22-39 |
| Cheng SY, Duong HV, Compton C, et al. (2015) Characterization of 3D Voronoi tessellation nearest neighbor lipid shells provides atomistic lipid disruption profile of protein containing lipid membranes. Biophysical Chemistry. 198: 22-35 |
| Abella JR, Cheng SY, Wang Q, et al. (2014) Hydration Free Energy from Orthogonal Space Random Walk and Polarizable Force Field. Journal of Chemical Theory and Computation. 10: 2792-2801 |
| Qiu L, Buie C, Cheng SY, et al. (2012) Atomistic MD Simulations Reveal the Protective Role of Cholesterol in the Membrane Disruptive Effects of Dimeric Beta-Amyloid in Neuronal Membrane Mimics Biophysical Journal. 102 |