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Ram Prasad Bora, PhD

Affiliations: 
2008-2010 Chemistry University of Southern California, Los Angeles, CA, United States 
Area:
Computer simulations (Free energy) based virtual screening, docking, and structure based drug design
Website:
https://sites.google.com/site/ramcompbiochem/home
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"Ram Prasad Bora"
Bio:

Currently Director of Artificial Intelligence & Data Sciences at Capgemini Invent, San Francisco, California

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Mangala Sunder Krishnan grad student 2001-2007 chemistry

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Jindal G, Ramachandran B, Bora RP, et al. (2017) Exploring the Development of Ground-State Destabilization and Transition-State Stabilization in Two Directed Evolution Paths of Kemp Eliminases. Acs Catalysis. 7: 3301-3305
Paul TJ, Barman A, Ozbil M, et al. (2016) Mechanisms of peptide hydrolysis by aspartyl and metalloproteases. Physical Chemistry Chemical Physics : Pccp. 18: 24790-24801
Warshel A, Bora RP. (2016) Perspective: Defining and quantifying the role of dynamics in enzyme catalysis. The Journal of Chemical Physics. 144: 180901
Mukherjee S, Bora RP, Warshel A. (2015) Torque, chemistry and efficiency in molecular motors: a study of the rotary-chemical coupling in F1-ATPase. Quarterly Reviews of Biophysics. 48: 395-403
Bora RP, Mills MJ, Frushicheva MP, et al. (2015) On the challenge of exploring the evolutionary trajectory from phosphotriesterase to arylesterase using computer simulations. The Journal of Physical Chemistry. B. 119: 3434-45
Zhang T, Ozbil M, Barman A, et al. (2015) Theoretical insights into the functioning of metallopeptidases and their synthetic analogues. Accounts of Chemical Research. 48: 192-200
Lameira J, Bora RP, Chu ZT, et al. (2015) Methyltransferases do not work by compression, cratic, or desolvation effects, but by electrostatic preorganization. Proteins. 83: 318-30
Bora RP. (2015) Ribosome Assisted GTP Hydrolysis by EF-Tu - Mechanism and the Role of Asp21 Biophysical Journal. 108
Rychkova A, Mukherjee S, Bora RP, et al. (2013) Simulating the pulling of stalled elongated peptide from the ribosome by the translocon. Proceedings of the National Academy of Sciences of the United States of America. 110: 10195-200
Ozbil M, Barman A, Bora RP, et al. (2012) Computational Insights into Dynamics of Protein Aggregation and Enzyme-Substrate Interactions. The Journal of Physical Chemistry Letters. 3: 3460-9
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