Christopher T. Saunders
Affiliations: | 2007 | University of Washington, Seattle, Seattle, WA |
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Parents
Sign in to add mentor| Phil P. Green | grad student | 2007 | University of Washington | |
| (Modeling protein evolution: Phylogenetic analysis with context-dependent mutation and recapitulation of family divergence via flexible backbone design.) | ||||
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| Saunders CT, Holt JM, Baker DN, et al. (2025) Sawfish: Improving long-read structural variant discovery and genotyping with local haplotype modeling. Bioinformatics (Oxford, England) |
| Holt JM, Harting J, Chen X, et al. (2024) StarPhase: Comprehensive Phase-Aware Pharmacogenomic Diplotyper for Long-Read Sequencing Data. Biorxiv : the Preprint Server For Biology |
| Cheung WA, Johnson AF, Rowell WJ, et al. (2023) Direct haplotype-resolved 5-base HiFi sequencing for genome-wide profiling of hypermethylation outliers in a rare disease cohort. Nature Communications. 14: 3090 |
| Kim S, Scheffler K, Halpern AL, et al. (2018) Strelka2: fast and accurate calling of germline and somatic variants. Nature Methods |
| Chen X, Schulz-Trieglaff O, Shaw R, et al. (2015) Manta: Rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinformatics (Oxford, England) |
| Raczy C, Petrovski R, Saunders CT, et al. (2013) Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. Bioinformatics (Oxford, England). 29: 2041-3 |
| Saunders CT, Wong WS, Swamy S, et al. (2012) Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics (Oxford, England). 28: 1811-7 |
| Kozanitis C, Saunders C, Kruglyak S, et al. (2011) Compressing genomic sequence fragments using SlimGene. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 401-13 |
| Saunders CT, Green P. (2007) Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection. Molecular Biology and Evolution. 24: 2632-47 |
| Saunders CT, Baker D. (2005) Recapitulation of protein family divergence using flexible backbone protein design. Journal of Molecular Biology. 346: 631-44 |