Nilah Monnier Ioannidis
Affiliations: | 2009-2013 | Computational Biology and Biophysics | Massachusetts Institute of Technology, Cambridge, MA, United States |
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"Nilah Ioannidis"Mean distance: 10.61 | S | N | B | C | P |
Parents
Sign in to add mentor| Mark Bathe | grad student | 2009-2013 | MIT |
| Carlos D. Bustamante | post-doc | 2013-2015 | Stanford (Evolution Tree) |
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Publications
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| Bajwa A, Rastogi R, Kathail P, et al. (2023) Characterizing uncertainty in predictions of genomic sequence-to-activity models. Biorxiv : the Preprint Server For Biology |
| Huang C, Shuai RW, Baokar P, et al. (2023) Personal transcriptome variation is poorly explained by current genomic deep learning models. Nature Genetics. 55: 2056-2059 |
| Jagota M, Ye C, Albors C, et al. (2023) Cross-protein transfer learning substantially improves disease variant prediction. Genome Biology. 24: 182 |
| Yamamoto R, Chung R, Vazquez JM, et al. (2022) Tissue-specific impacts of aging and genetics on gene expression patterns in humans. Nature Communications. 13: 5803 |
| Wu Z, Ioannidis NM, Zou J. (2020) Predicting target genes of noncoding regulatory variants with ICE. Bioinformatics (Oxford, England) |
| Liu W, Pajusalu S, Lake NJ, et al. (2019) Estimating prevalence for limb-girdle muscular dystrophy based on public sequencing databases. Genetics in Medicine : Official Journal of the American College of Medical Genetics |
| Ioannidis NM, Wang W, Furlotte NA, et al. (2018) Gene expression imputation identifies candidate genes and susceptibility loci associated with cutaneous squamous cell carcinoma. Nature Communications. 9: 4264 |
| Wang W, Ollila HM, Whittemore AS, et al. (2018) Genetic variants in the HLA class II region associated with risk of cutaneous squamous cell carcinoma. Cancer Immunology, Immunotherapy : Cii |
| Ioannidis NM, Davis JR, DeGorter MK, et al. (2017) FIRE: functional inference of genetic variants that regulate gene expression. Bioinformatics (Oxford, England) |
| Yesantharao P, Wang W, Ioannidis NM, et al. (2017) Cutaneous Squamous Cell Cancer (cSCC) Risk and the Human Leukocyte Antigen (HLA) System. Human Immunology |