Paul M. Gasper
Affiliations: | 2013 | Chemistry | University of California, San Diego, La Jolla, CA |
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"Paul Gasper"Mean distance: 8.42 | S | N | B | C | P |
Parents
Sign in to add mentor| J. Andrew McCammon | grad student | 2013 | UCSD | |
| (Identification of Allosteric Mechanisms in Thrombin through Molecular Dynamics Simulations.) | ||||
| Alan A. Chen | post-doc | 2014-2017 | SUNY Albany (BME Tree) | |
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Publications
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| Yu AM, Gasper PM, Cheng L, et al. (2021) Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates. Molecular Cell |
| Takahashi MK, Watters KE, Gasper PM, et al. (2016) Using in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators. Rna (New York, N.Y.) |
| Gasper PM, Chen AA. (2015) Sequence Specificity in RNA-Mediated Transcriptional Attenuation Examined by Coarse-Grained MD Simulations Biophysical Journal. 108 |
| Miao Y, Nichols SE, Gasper PM, et al. (2013) Activation and dynamic network of the M2 muscarinic receptor. Proceedings of the National Academy of Sciences of the United States of America. 110: 10982-7 |
| Fuglestad B, Gasper PM, McCammon JA, et al. (2013) Correlated motions and residual frustration in thrombin. The Journal of Physical Chemistry. B. 117: 12857-63 |
| Gasper PM, McCammon JA. (2013) Protein Kinase G Ligand Binding Specificity via Confine-And-Release Thermodynamic Integration Biophysical Journal. 104: 556a |
| Gasper PM, Fuglestad B, Komives EA, et al. (2012) Allosteric networks in thrombin distinguish procoagulant vs. anticoagulant activities. Proceedings of the National Academy of Sciences of the United States of America. 109: 21216-22 |
| Fuglestad B, Gasper PM, Tonelli M, et al. (2012) The dynamic structure of thrombin in solution. Biophysical Journal. 103: 79-88 |
| Gasper PM, Markwick PR, McCammon JA. (2012) Accelerated Molecular Dynamics Simulations of Thrombin-Thrombomodulin Reveal Potential for Entropic Allostery Biophysical Journal. 102: 735a-736a |