| Year |
Citation |
Score |
| 2020 |
Khutsishvili I, Carr CE, Marky LA. The Inclusion of a GCAA Tetraloop Affects the Unfolding Thermodynamics of Intramolecular DNA Structures Biophysical Journal. 118: 66a. DOI: 10.1016/J.Bpj.2019.11.534 |
0.465 |
|
| 2019 |
Carr CE, Marky LA. Thermodynamic Verification of Kissing-Loop Interactions Biophysical Journal. 116: 359a. DOI: 10.1016/J.Bpj.2018.11.1956 |
0.303 |
|
| 2018 |
Carr CE, Marky LA. Thermodynamic investigation of kissing-loop interactions. Biochimie. 157: 177-183. PMID 30502370 DOI: 10.1016/J.Biochi.2018.11.012 |
0.456 |
|
| 2018 |
Carr CE, Khutsishvili I, Gold B, Marky LA. Thermodynamic Stability of DNA Duplexes Comprising the Simplest T → dU Substitutions. Biochemistry. PMID 30185020 DOI: 10.1021/Acs.Biochem.8B00676 |
0.522 |
|
| 2018 |
Carr CE, Khutsishvili I, Marky LA. Energetics, Ion and Water Binding of the Unfolding of AA/UU Base Pair Stacks and UAU/UAU Base Triplet Stacks in RNA. The Journal of Physical Chemistry. B. PMID 29932334 DOI: 10.1021/Acs.Jpcb.8B05575 |
0.455 |
|
| 2018 |
Carr CE, Marky LA. Increased Flexibility between Stems of Intramolecular Three-Way Junctions by the Insertion of Bulges. Biophysical Journal. 114: 2764-2774. PMID 29925014 DOI: 10.1016/J.Bpj.2018.05.001 |
0.492 |
|
| 2018 |
Carr CE, Marky LA. Effect of GCAA stabilizing loops on three- and four-way intramolecular junctions. Physical Chemistry Chemical Physics : Pccp. PMID 29388988 DOI: 10.1039/C7Cp08329G |
0.431 |
|
| 2018 |
Marky LA, Carr CE. Folding/Unfolding Thermodynamics of Three-Way and Four-Way Junctions Biophysical Journal. 114: 86a. DOI: 10.1016/J.Bpj.2017.11.513 |
0.308 |
|
| 2017 |
Carr CE, Ganugula R, Shikiya R, Soto AM, Marky LA. Effect of dC → d(m5C) Substitutions on the Folding of Intramolecular Triplexes with Mixed TAT and C+GC Base Triplets. Biochimie. PMID 29277568 DOI: 10.1016/J.Biochi.2017.12.008 |
0.798 |
|
| 2017 |
Johnson SE, Reiling-Steffensmeier C, Lee HT, Marky LA. Unfolding and Targeting Thermodynamics of a DNA Intramolecular Complex With Joined Triplex-Duplex Domains. The Journal of Physical Chemistry. B. PMID 29265815 DOI: 10.1021/Acs.Jpcb.7B10379 |
0.714 |
|
| 2017 |
Reiling-Steffensmeier C, Marky LA. Structural Insight on the Unbound State of the DNA Analog of the preQ1 Riboswitch: A Thermodynamic Approach. Biochemistry. PMID 29076719 DOI: 10.1021/Acs.Biochem.7B00596 |
0.532 |
|
| 2017 |
Carr CE, Marky LA. Melting Behavior of a DNA Four-way Junction Using Spectroscopic and Calorimetric Techniques. Journal of the American Chemical Society. PMID 28921984 DOI: 10.1021/Jacs.7B06429 |
0.476 |
|
| 2017 |
Lee HT, Carr CE, Khutsishvili I, Marky LA. Effect of Loop Length and Sequence on the Stability of DNA Pyrimidine Triplexes with TAT Base Triplets. The Journal of Physical Chemistry. B. PMID 28875701 DOI: 10.1021/Acs.Jpcb.7B07591 |
0.725 |
|
| 2017 |
Carr CE, Marky LA. Investigation of the Melting Behavior of DNA Three-Way Junctions in the Closed and Open States. Biophysical Journal. 113: 529-539. PMID 28793208 DOI: 10.1016/J.Bpj.2017.06.024 |
0.46 |
|
| 2017 |
Reiling-Steffensmeier C, Marky LA. Unfolding Thermodynamics of the Bound and Unbound States of the preQ 1 Riboswitch Biophysical Journal. 112: 215a-216a. DOI: 10.1016/J.Bpj.2016.11.1190 |
0.406 |
|
| 2016 |
Reiling-Steffensmeier C, Marky LA. The Complementarity of the Loop to the Stem in DNA Pseudoknots Gives Rise to Local TAT Base-Triplets. Methods in Enzymology. 567: 413-32. PMID 26794363 DOI: 10.1016/Bs.Mie.2015.07.029 |
0.496 |
|
| 2016 |
Reiling-Steffensmeier C, Marky LA. A Comparative Investigation of the Stability of DNA and RNA Pseudoknots Biophysical Journal. 110: 363a-364a. DOI: 10.1016/J.Bpj.2015.11.1959 |
0.473 |
|
| 2015 |
Olsen CM, Shikiya R, Ganugula R, Reiling-Steffensmeier C, Khutsishvili I, Johnson SE, Marky LA. Application of differential scanning calorimetry to measure the differential binding of ions, water and protons in the unfolding of DNA molecules. Biochimica Et Biophysica Acta. PMID 26450631 DOI: 10.1016/J.Bbagen.2015.10.002 |
0.786 |
|
| 2015 |
Reiling-Steffensmeier C, Marky LA. 133 Formation of local TAT base-triplets in DNA pseudoknots with stem-loop complementarity. Journal of Biomolecular Structure & Dynamics. 33: 86. PMID 26103345 DOI: 10.1080/07391102.2015.1032766 |
0.426 |
|
| 2015 |
Reiling C, Khutsishvili I, Huang K, Marky LA. Loop contributions to the folding thermodynamics of DNA straight hairpin loops and pseudoknots. The Journal of Physical Chemistry. B. 119: 1939-46. PMID 25584896 DOI: 10.1021/Jp5116417 |
0.483 |
|
| 2015 |
Prislan I, Lee HT, Lee C, Marky LA. The size of the internal loop in DNA hairpins influences their targeting with partially complementary strands. The Journal of Physical Chemistry. B. 119: 96-104. PMID 25486129 DOI: 10.1021/Jp510131C |
0.744 |
|
| 2015 |
Reiling C, Khutsishvili I, Marky LA. DNA Pseudoknots with Appropriate Loop Lengths and Sequence Complementary to the Stem form Stabilizing Base-Triplet Stacks Biophysical Journal. 108: 392a. DOI: 10.1016/J.Bpj.2014.11.2149 |
0.486 |
|
| 2015 |
Lee H, Lushnikov AJ, Khustsishvili I, Marky LA. Thermodynamics for the Interaction of PEG-PLL Copolymers with DNA Biophysical Journal. 108: 352a-353a. DOI: 10.1016/J.Bpj.2014.11.1930 |
0.762 |
|
| 2014 |
Gold B, Stone MP, Marky LA. Looking for Waldo: a potential thermodynamic signature to DNA damage. Accounts of Chemical Research. 47: 1446-54. PMID 24702131 DOI: 10.1021/Ar500061P |
0.477 |
|
| 2014 |
Reiling C, Marky LA. Contributions of the loops on the stability and targeting of DNA pseudoknots Biochemical Compounds. 2: 3. DOI: 10.7243/2052-9341-2-3 |
0.331 |
|
| 2014 |
Reiling C, Marky LA. Targeting of a DNA Pseudoknot is Hindered Due to Formation of Base-Triplet Stacks Biophysical Journal. 106: 694a. DOI: 10.1016/J.Bpj.2013.11.3837 |
0.497 |
|
| 2013 |
Khutsishvili I, Zhang N, Marky LA, Crean C, Patel DJ, Geacintov NE, Shafirovich V. Thermodynamic profiles and nuclear magnetic resonance studies of oligonucleotide duplexes containing single diastereomeric spiroiminodihydantoin lesions. Biochemistry. 52: 1354-63. PMID 23360616 DOI: 10.1021/Bi301566V |
0.374 |
|
| 2013 |
Khutshivilli I, Prislan I, Marky LA. 84 PPC measurements of unfolding volumes of DNA stem-loop motifs Journal of Biomolecular Structure and Dynamics. 31: 54-54. DOI: 10.1080/07391102.2013.786518 |
0.473 |
|
| 2013 |
Reiling C, Johnson SE, Lee H, Marky LA. 82 Targeting intramolecular DNA structures with complementary strands Journal of Biomolecular Structure and Dynamics. 31: 53-53. DOI: 10.1080/07391102.2013.786516 |
0.74 |
|
| 2013 |
Khutshivilli I, Prislan I, Lee H, Lee C, Marky LA. Unfolding and Targeting Thermodynamics of DNA Stem-Loop Motifs Biophysical Journal. 104: 422a. DOI: 10.1016/J.Bpj.2012.11.2352 |
0.747 |
|
| 2012 |
Lee HT, Waters L, Olsen CM, Khutsishvili I, Marky LA. Probing the Temperature Unfolding of a Variety of DNA Secondary Structures Using the Fluorescence Properties of 2-aminopurine. Acta Chimica Slovenica. 59: 443-53. PMID 24061296 |
0.695 |
|
| 2012 |
Shikiya R, Khutsishvili I, Marky LA. Differential Binding of Ions and Water in the Unfolding of DNA Hairpins Biophysical Journal. 102: 277a. DOI: 10.1016/J.Bpj.2011.11.1527 |
0.795 |
|
| 2011 |
Miyoshi D, Simmel FC, Maiti S, Marky LA. Synthesis and application of functional nucleic acids. Journal of Nucleic Acids. 2011: 547245. PMID 22132317 DOI: 10.4061/2011/547245 |
0.38 |
|
| 2011 |
Kowal EA, Ganguly M, Pallan PS, Marky LA, Gold B, Egli M, Stone MP. Altering the electrostatic potential in the major groove: thermodynamic and structural characterization of 7-deaza-2'-deoxyadenosine:dT base pairing in DNA. The Journal of Physical Chemistry. B. 115: 13925-34. PMID 22059929 DOI: 10.1021/Jp207104W |
0.473 |
|
| 2011 |
Gmeiner WH, Salsbury F, Olsen CM, Marky LA. The stability of a model substrate for topoisomerase 1-mediated DNA religation depends on the presence of mismatched base pairs. Journal of Nucleic Acids. 2011: 631372. PMID 21904666 DOI: 10.4061/2011/631372 |
0.498 |
|
| 2011 |
Prakash A, Natarajan A, Marky LA, Ouellette MM, Borgstahl GE. Identification of the DNA-Binding Domains of Human Replication Protein A That Recognize G-Quadruplex DNA. Journal of Nucleic Acids. 2011: 896947. PMID 21772997 DOI: 10.4061/2011/896947 |
0.494 |
|
| 2011 |
Prakash A, Kieken F, Marky LA, Borgstahl GE. Stabilization of a G-Quadruplex from Unfolding by Replication Protein A Using Potassium and the Porphyrin TMPyP4. Journal of Nucleic Acids. 2011: 529828. PMID 21772995 DOI: 10.4061/2011/529828 |
0.477 |
|
| 2011 |
Maiti S, Kankia B, Khutsishvili I, Marky LA. Melting behavior and ligand binding of DNA intramolecular secondary structures. Biophysical Chemistry. 159: 162-71. PMID 21752531 DOI: 10.1016/J.Bpc.2011.06.006 |
0.537 |
|
| 2011 |
Prislan I, Khutsishvili I, Marky LA. Interaction of minor groove ligands with G-quadruplexes: thermodynamic contributions of the number of quartets, T-U substitutions, and conformation. Biochimie. 93: 1341-50. PMID 21684318 DOI: 10.1016/J.Biochi.2011.06.001 |
0.328 |
|
| 2011 |
Singh SK, Szulik MW, Ganguly M, Khutsishvili I, Stone MP, Marky LA, Gold B. Characterization of DNA with an 8-oxoguanine modification. Nucleic Acids Research. 39: 6789-801. PMID 21572101 DOI: 10.1093/Nar/Gkr275 |
0.462 |
|
| 2011 |
Lee HT, Carr C, Siebler H, Waters L, Khutsishvili I, Iseka F, Domack B, Olsen CM, Marky LA. A thermodynamic approach for the targeting of nucleic acid structures using their complementary single strands. Methods in Enzymology. 492: 1-26. PMID 21333787 DOI: 10.1016/B978-0-12-381268-1.00013-6 |
0.728 |
|
| 2011 |
Prislan I, Lee HT, Lee C, Marky LA. The size of internal loops influences the unfolding thermodynamics of DNA hairpins Acs Symposium Series. 1082: 93-110. DOI: 10.1021/bk-2011-1082.ch006 |
0.338 |
|
| 2011 |
Prislan I, Lee H, Lee C, Marky LA. Unfolding and Targeting Thermodynamics of DNA Hairpins Containing Internal Loops Biophysical Journal. 100: 77a. DOI: 10.1016/J.Bpj.2010.12.625 |
0.761 |
|
| 2010 |
Ganguly M, Wang RW, Marky LA, Gold B. Thermodynamic characterization of DNA with 3-deazaadenine and 3-methyl-3-deazaadenine substitutions: the effect of placing a hydrophobic group in the minor groove of DNA. The Journal of Physical Chemistry. B. 114: 7656-61. PMID 20469878 DOI: 10.1021/Jp101004K |
0.477 |
|
| 2010 |
Olsen CM, Marky LA. Monitoring the temperature unfolding of G-quadruplexes by UV and circular dichroism spectroscopies and calorimetry techniques. Methods in Molecular Biology (Clifton, N.J.). 608: 147-58. PMID 20012421 DOI: 10.1007/978-1-59745-363-9_10 |
0.368 |
|
| 2010 |
Lee HT, Khutsishvili I, Marky LA. DNA complexes containing joined triplex and duplex motifs: melting behavior of intramolecular and bimolecular complexes with similar sequences. The Journal of Physical Chemistry. B. 114: 541-8. PMID 19928823 DOI: 10.1021/Jp9084074 |
0.755 |
|
| 2010 |
Lee H, Carr C, Siebler H, Khutsishvilli I, Marky LA. Targeting DNA Hairpin Loops with their Partially Complementary Strands Biophysical Journal. 98: 656a. DOI: 10.1016/J.Bpj.2009.12.3600 |
0.744 |
|
| 2010 |
Khutsishvili I, Johnson S, Lee H, Marky LA. Melting Behavior of DNA Complexes With Joined Triple and Duplex Motifs Biophysical Journal. 98: 42a. DOI: 10.1016/J.Bpj.2009.12.240 |
0.73 |
|
| 2010 |
Ganguly M, Wang R, Wang F, Stone MP, Marky LA, Gold BI. The Effect of Site-Specific Modifications of DNA on Thermodynamic Stability, Ion Binding and Hydration Biophysical Journal. 98: 41a-42a. DOI: 10.1016/J.Bpj.2009.12.239 |
0.541 |
|
| 2009 |
Khutsishvili I, Johnson S, Lee HT, Marky LA. Unfolding thermodynamics of DNA intramolecular complexes involving joined triple- and double-helical motifs. Methods in Enzymology. 466: 477-502. PMID 21609873 DOI: 10.1016/S0076-6879(09)66020-1 |
0.757 |
|
| 2009 |
Ganguly M, Wang RW, Marky LA, Gold B. Introduction of cationic charge into DNA near the major groove edge of a guanine x cytosine base pair: characterization of oligodeoxynucleotides substituted with 7-aminomethyl-7-deaza-2'-deoxyguanosine. Journal of the American Chemical Society. 131: 12068-9. PMID 19663509 DOI: 10.1021/Ja904930P |
0.514 |
|
| 2009 |
Olsen CM, Marky LA. Energetic and hydration contributions of the removal of methyl groups from thymine to form uracil in G-quadruplexes. The Journal of Physical Chemistry. B. 113: 9-11. PMID 19198041 DOI: 10.1021/Jp808526D |
0.341 |
|
| 2009 |
Olsen CM, Lee HT, Marky LA. Unfolding thermodynamics of intramolecular G-quadruplexes: base sequence contributions of the loops. The Journal of Physical Chemistry. B. 113: 2587-95. PMID 19014184 DOI: 10.1021/Jp806853N |
0.734 |
|
| 2009 |
Lee H, Waters L, Olsen CM, Khutsishvili I, Marky LA. Helix-Coil Transitions of Unusual DNA Structures by Measuring the Fluorescence Changes of 2-Aminopurine When Incorporated into DNA Biophysical Journal. 96: 346a. DOI: 10.1016/J.Bpj.2008.12.1741 |
0.736 |
|
| 2008 |
Wang F, Li F, Ganguly M, Marky LA, Gold B, Egli M, Stone MP. A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards. Biochemistry. 47: 7147-57. PMID 18549246 DOI: 10.1021/Bi800375M |
0.358 |
|
| 2008 |
Lee HT, Arciniegas S, Marky LA. Unfolding thermodynamics of DNA pyrimidine triplexes with different molecularities. The Journal of Physical Chemistry. B. 112: 4833-40. PMID 18358029 DOI: 10.1021/Jp710926H |
0.769 |
|
| 2008 |
Lee HT, Olsen CM, Waters L, Sukup H, Marky LA. Thermodynamic contributions of the reactions of DNA intramolecular structures with their complementary strands. Biochimie. 90: 1052-63. PMID 18312857 DOI: 10.1016/J.Biochi.2008.02.002 |
0.747 |
|
| 2007 |
Ganguly M, Wang F, Kaushik M, Stone MP, Marky LA, Gold B. A study of 7-deaza-2'-deoxyguanosine 2'-deoxycytidine base pairing in DNA. Nucleic Acids Research. 35: 6181-95. PMID 17855404 DOI: 10.1093/Nar/Gkm670 |
0.522 |
|
| 2007 |
Liu XM, Lee HT, Reinhardt RA, Marky LA, Wang D. Novel biomineral-binding cyclodextrins for controlled drug delivery in the oral cavity. Journal of Controlled Release : Official Journal of the Controlled Release Society. 122: 54-62. PMID 17673326 DOI: 10.1016/J.Jconrel.2007.06.021 |
0.651 |
|
| 2007 |
Kaushik M, Suehl N, Marky LA. Calorimetric unfolding of the bimolecular and i-motif complexes of the human telomere complementary strand, d(C(3)TA(2))(4). Biophysical Chemistry. 126: 154-64. PMID 16822606 DOI: 10.1016/J.Bpc.2006.05.031 |
0.434 |
|
| 2006 |
Olsen CM, Gmeiner WH, Marky LA. Unfolding of G-quadruplexes: energetic, and ion and water contributions of G-quartet stacking. The Journal of Physical Chemistry. B. 110: 6962-9. PMID 16571009 DOI: 10.1021/Jp0574697 |
0.41 |
|
| 2006 |
Soto AM, Rentzeperis D, Shikiya R, Alonso M, Marky LA. DNA intramolecular triplexes containing dT --> dU substitutions: unfolding energetics and ligand binding. Biochemistry. 45: 3051-9. PMID 16503660 DOI: 10.1021/Bi052203B |
0.817 |
|
| 2005 |
Shikiya R, Marky LA. Calorimetric unfolding of intramolecular triplexes: length dependence and incorporation of single AT --> TA substitutions in the duplex domain. The Journal of Physical Chemistry. B. 109: 18177-83. PMID 16853334 DOI: 10.1021/Jp052327Y |
0.786 |
|
| 2005 |
Shikiya R, Li JS, Gold B, Marky LA. Incorporation of cationic chains in the Dickerson-Drew dodecamer: correlation of energetics, structure, and ion and water binding. Biochemistry. 44: 12582-8. PMID 16156670 DOI: 10.1021/Bi050897I |
0.754 |
|
| 2005 |
Li JS, Chen FX, Shikiya R, Marky LA, Gold B. Molecular recognition via triplex formation of mixed purine/pyrimidine DNA sequences using oligoTRIPs. Journal of the American Chemical Society. 127: 12657-65. PMID 16144414 DOI: 10.1021/Ja0530218 |
0.774 |
|
| 2005 |
Moulaei T, Maehigashi T, Lountos GT, Komeda S, Watkins D, Stone MP, Marky LA, Li JS, Gold B, Williams LD. Structure of B-DNA with cations tethered in the major groove. Biochemistry. 44: 7458-68. PMID 15895989 DOI: 10.1021/Bi050128Z |
0.457 |
|
| 2004 |
Mao XA, Marky LA, Gmeiner WH. NMR structure of the thrombin-binding DNA aptamer stabilized by Sr 2+ Journal of Biomolecular Structure and Dynamics. 22: 25-33. PMID 15214802 DOI: 10.1080/07391102.2004.10506977 |
0.417 |
|
| 2004 |
Li JS, Shikiya R, Marky LA, Gold B. Triple helix forming TRIPside molecules that target mixed purine/pyrimidine DNA sequences. Biochemistry. 43: 1440-8. PMID 14769020 DOI: 10.1021/Bi035648D |
0.778 |
|
| 2003 |
Li JS, Fan YH, Zhang Y, Marky LA, Gold B. Design of triple helix forming C-glycoside molecules. Journal of the American Chemical Society. 125: 2084-93. PMID 12590536 DOI: 10.1021/Ja028033X |
0.457 |
|
| 2002 |
Soto AM, Loo J, Marky LA. Energetic contributions for the formation of TAT/TAT, TAT/CGC(+), and CGC(+)/CGC(+) base triplet stacks. Journal of the American Chemical Society. 124: 14355-63. PMID 12452709 DOI: 10.1021/Ja026952H |
0.62 |
|
| 2002 |
Comolli LR, Ulyanov NB, Soto AM, Marky LA, James TL, Gmeiner WH. NMR structure of the 3' stem-loop from human U4 snRNA. Nucleic Acids Research. 30: 4371-9. PMID 12384583 DOI: 10.1093/Nar/Gkf560 |
0.589 |
|
| 2002 |
Soto AM, Marky LA. Thermodynamic contributions for the incorporation of GTA triplets within canonical TAT/TAT and C+GC/C+GC base-triplet stacks of DNA triplexes. Biochemistry. 41: 12475-82. PMID 12369838 DOI: 10.1021/Bi026166P |
0.631 |
|
| 2002 |
Kankia BI, Soto AM, Burns N, Shikiya R, Tung CS, Marky LA. DNA oligonucleotide duplexes containing intramolecular platinated cross-links: energetics, hydration, sequence, and ionic effects. Biopolymers. 65: 218-27. PMID 12228927 DOI: 10.1002/Bip.10240 |
0.828 |
|
| 2002 |
Soto AM, Kankia BI, Dande P, Gold B, Marky LA. Thermodynamic and hydration effects for the incorporation of a cationic 3-aminopropyl chain into DNA. Nucleic Acids Research. 30: 3171-80. PMID 12136099 DOI: 10.1093/Nar/Gkf430 |
0.703 |
|
| 2002 |
Soto AM, Gmeiner WH, Marky LA. Energetic and conformational contributions to the stability of Okazaki fragments. Biochemistry. 41: 6842-9. PMID 12022889 DOI: 10.1021/Bi025715O |
0.689 |
|
| 2002 |
Konerding D, James TL, Trump E, Soto AM, Marky LA, Gmeiner WH. NMR structure of a gemcitabine-substituted model Okazaki fragment. Biochemistry. 41: 839-46. PMID 11790105 DOI: 10.1021/Bi015678L |
0.666 |
|
| 2002 |
Rentzeperis D, Shikiya R, Maiti S, Ho J, Marky LA. Folding of intramolecular DNA hairpin loops: Enthalpy-entropy compensations and hydration contributions Journal of Physical Chemistry B. 106: 9945-9950. DOI: 10.1021/Jp0260853 |
0.815 |
|
| 2002 |
Marky LA. Editorial: Thermodynamics and structure of nucleic acids with modified bases Biopolymers. 65: 171-172. DOI: 10.1002/Bip.10268 |
0.309 |
|
| 2001 |
Kankia BI, Marky LA. Folding of the thrombin aptamer into a G-quadruplex with Sr2+: Stability, heat, and hydration Journal of the American Chemical Society. 123: 10799-10804. PMID 11686680 DOI: 10.1021/Ja010008O |
0.438 |
|
| 2001 |
Soto AM, Kankia BI, Dande P, Gold B, Marky LA. Incorporation of a cationic aminopropyl chain in DNA hairpins: thermodynamics and hydration. Nucleic Acids Research. 29: 3638-45. PMID 11522834 DOI: 10.1093/Nar/29.17.3638 |
0.679 |
|
| 2001 |
Marky LA, Kupke DW, Kankia BI. Volume changes accompanying interaction of ligands with nucleic acids Methods in Enzymology. 340: 149-165. PMID 11494847 DOI: 10.1016/S0076-6879(01)40421-6 |
0.327 |
|
| 2001 |
Shah D, Kelly J, Zhang Y, Dande P, Martinez J, Ortiz G, Fronza G, Tran H, Soto AM, Marky L, Gold B. Evidence in Escherichia coli that N3-methyladenine lesions induced by a minor groove binding methyl sulfonate ester can be processed by both base and nucleotide excision repair. Biochemistry. 40: 1796-803. PMID 11327842 DOI: 10.1021/Bi0024658 |
0.603 |
|
| 2001 |
Kankia BI, Kupke DW, Marky LA. The incorporation of a platinated cross-link into duplex DNA yields an uptake of structural water Journal of Physical Chemistry B. 105: 11402-11405. DOI: 10.1021/Jp0129885 |
0.514 |
|
| 2001 |
Bronich T, Kabanov AV, Marky LA. A thermodynamic characterization of the interaction of a cationic copolymer with DNA Journal of Physical Chemistry B. 105: 6042-6050. DOI: 10.1021/Jp004395K |
0.512 |
|
| 2000 |
Gmeiner WH, Cui W, Sharma S, Soto AM, Marky LA, Lown JW. Shape-selective binding of geometrically-constrained bis-distamycins to a DNA duplex and a model Okazaki fragment of identical sequence Nucleosides, Nucleotides and Nucleic Acids. 19: 1365-1379. PMID 11097065 DOI: 10.1080/15257770008033058 |
0.633 |
|
| 2000 |
Marky LA, Kupke DW. Enthalpy-entropy compensations in nucleic acids: Contribution of electrostriction and structural hydration Methods in Enzymology. 323: 419-441. PMID 10944762 DOI: 10.1016/S0076-6879(00)23376-4 |
0.505 |
|
| 2000 |
Gmeiner WH, Hudalla CJ, Soto AM, Marky L. Binding of ethidium to DNA measured using a 2D diffusion-modulated gradient COSY NMR experiment. Febs Letters. 465: 148-52. PMID 10631323 DOI: 10.1016/S0014-5793(99)01741-X |
0.583 |
|
| 2000 |
Bronich TK, Kankia BI, Kabanov AV, Marky LA. A thermodynamic investigation of the interaction of polycations with DNA American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 41: 1611-1612. |
0.33 |
|
| 1999 |
Gmeiner WH, Cui W, Konerding DE, Keifer PA, Sharma SK, Soto AM, Marky LA, Lown JW. Shape-selective recognition of a model Okazaki fragment by geometrically-constrained bis-distamycins Journal of Biomolecular Structure and Dynamics. 17: 507-518. PMID 10636085 DOI: 10.1080/07391102.1999.10508381 |
0.646 |
|
| 1999 |
Kankia BI, Funck T, Marky LA. Hydrolysis of cis- and trans-diammineplatinum(II) complexes: Hydration, equilibrium, and kinetics properties Journal of Solution Chemistry. 28: 1249-1261. DOI: 10.1023/A:1021788616430 |
0.306 |
|
| 1999 |
Kankia BI, Marky LA. DNA, RNA, and DNA/RNA Oligomer Duplexes: A Comparative Study of Their Stability, Heat, Hydration, and Mg2+ Binding Properties Journal of Physical Chemistry B. 103: 8759-8767. DOI: 10.1021/Jp991614X |
0.477 |
|
| 1999 |
Kankia BI, Marky LA. DNA, RNA, and DNA/RNA Oligomer Duplexes: A Comparative Study of Their Stability, Heat, Hydration, and Mg2+ Binding Properties Journal of Physical Chemistry B. 103: 8759-8767. |
0.326 |
|
| 1998 |
Kudriashov ED, Bukin VA, Braginskaia FI, Marky LA. Volume effect and change in compressibility in intercalation of ethidium bromide and daunomycin in DNA Biofizika. 43: 40-45. PMID 9567175 |
0.362 |
|
| 1998 |
Kudryashov ED, Braginskaya FI, Buckin VA, Marky LA. Volume and Compressibility Effects in Intercalation of Ethidium Bromide and Daunomycin to DNA Biofizika. 43: 44-45. |
0.366 |
|
| 1997 |
Zhong M, Marky LA, Kallenbach NR, Kupke DW. Thermodynamics of dT--dT base pair mismatching in linear DNA duplexes and three-arm DNA junctions. Biochemistry. 36: 2485-91. PMID 9054553 DOI: 10.1021/Bi962373B |
0.426 |
|
| 1997 |
Jares-Erijman EA, Klement R, Machinek R, Wadkins RM, Kankia BI, Marky LA, Jovin TM. Binding of actinomycin D to single-stranded DNA Nucleosides and Nucleotides. 16: 661-667. DOI: 10.1080/07328319708002931 |
0.504 |
|
| 1996 |
Buckin V, Tran H, Morozov V, Marky LA. Hydration effects accompanying the substitution of counterions in the ionic atmosphere of poly(rA)·poly(rU) and poly(rA)·2poly(rU) helices Journal of the American Chemical Society. 118: 7033-7039. DOI: 10.1021/Ja960256Y |
0.368 |
|
| 1996 |
Marky LA, Rentzeperis D, Luneva NP, Cosman M, Geacintov NE, Kupke DW. Differential hydration thermodynamics of stereoisomeric DNA-benzo[a]pyrene adducts derived from diol epoxide enantiomers with different tumorigenic potentials Journal of the American Chemical Society. 118: 3804-3810. DOI: 10.1021/Ja9538703 |
0.526 |
|
| 1996 |
Marky LA, Alessi K, Rentzeperis D. Calorimetric studies of drug-DNA interactions Advances in Dna Sequence-Specific Agents. 2: 3-28. DOI: 10.1016/S1067-568X(96)80004-1 |
0.326 |
|
| 1995 |
Rentzeperis D, Marky LA, Dwyer TJ, Geierstanger BH, Pelton JG, Wemmer DE. Interaction of minor groove ligands to an AAATT/AATTT site: correlation of thermodynamic characterization and solution structure. Biochemistry. 34: 2937-45. PMID 7893707 DOI: 10.1021/Bi00009A025 |
0.414 |
|
| 1995 |
Rentzeperis D, Medero M, Marky LA. Thermodynamic investigation of the association of ethidium, propidium and bis-ethidium to DNA hairpins Bioorganic and Medicinal Chemistry. 3: 751-759. PMID 7582953 DOI: 10.1016/0968-0896(95)00056-M |
0.381 |
|
| 1995 |
Rentzeperis D, Marky LA. Ligand binding to the Hoogsteen-WC groove of TAT base triplets: Thermodynamic contribution of the thymine methyl groups Journal of the American Chemical Society. 117: 5423-5424. DOI: 10.1021/Ja00124A051 |
0.336 |
|
| 1994 |
Rentzeperis D, Kupke DW, Marky LA. Differential hydration of dA·dT base pairs in parallel-stranded DNA relative to antiparallel DNA Biochemistry. 33: 9588-9591. PMID 8068634 DOI: 10.1021/Bi00198A026 |
0.54 |
|
| 1994 |
Hernández LI, Zhong M, Courtney SH, Marky LA, Kallenbach NR. Equilibrium analysis of ethidium binding to DNA containing base mismatches and branches. Biochemistry. 33: 13140-6. PMID 7947720 DOI: 10.1021/Bi00248A025 |
0.507 |
|
| 1994 |
Buckin VA, Kankiya BI, Rentzeperis D, Marky LA. Mg2+ recognizes the sequence of DNA through its hydration shell Journal of the American Chemical Society. 116: 9423-9429. DOI: 10.1021/Ja00100A003 |
0.4 |
|
| 1994 |
Buckin VA, Kankiya BI, Rentzeperis D, Marky LA. Mg2+ recognizes the sequence of DNA through its hydration shell Journal of the American Chemical Society. 116: 9423-9429. |
0.337 |
|
| 1993 |
Marky LA. Contribution of loops and nicks to the formation of DNA dumbbells: Melting behavior and ligand binding Biochemistry. 32: 2564-2572. PMID 8448114 DOI: 10.1021/Bi00061A014 |
0.56 |
|
| 1993 |
Rentzeperis D, Alessi K, Marky LA. Thermodynamics of DNA hairpins: Contribution of loop size to hairpin stability and ethidium binding Nucleic Acids Research. 21: 2683-2689. PMID 8332464 DOI: 10.1093/Nar/21.11.2683 |
0.45 |
|
| 1993 |
Rentzeperis D, Marky LA. Netropsin binding as a thermodynamic probe of the grooves of parallel DNA Journal of the American Chemical Society. 115: 1645-1650. DOI: 10.1021/Ja00058A005 |
0.53 |
|
| 1992 |
Guo Q, Lu M, Marky LA, Kallenbach NR. Interaction of the dye ethidium bromide with DNA containing guanine repeats. Biochemistry. 31: 2451-5. PMID 1547228 DOI: 10.1021/Bi00124A002 |
0.324 |
|
| 1992 |
Lu M, Guo Q, Marky LA, Seeman NC, Kallenbach NR. Thermodynamics of DNA branching. Journal of Molecular Biology. 223: 781-9. PMID 1542118 DOI: 10.1016/0022-2836(92)90989-W |
0.53 |
|
| 1992 |
Zhong M, Rashes MS, Marky LA, Kallenbach NR. T-T base mismatches enhance drug binding at the branch site in a four-arm DNA junction. Biochemistry. 31: 8064-71. PMID 1510989 DOI: 10.1021/Bi00149A042 |
0.359 |
|
| 1992 |
Rentzeperis D, Kupke DW, Marky LA. Differential hydration of homopurine sequences relative to alternating purine/pyrimidine sequences Biopolymers. 32: 1065-1075. PMID 1330046 DOI: 10.1002/bip.360320816 |
0.316 |
|
| 1992 |
Rentzeperis D, Marky LA, Kupke DW. Entropy-volume correlation with hydration changes in DNA-ligand interactions Journal of Physical Chemistry. 96: 9612-9613. DOI: 10.1021/J100203A011 |
0.445 |
|
| 1992 |
Rentzeperis D, Rippe K, Jovin TM, Marky LA. Calorimetric characterization of parallel-stranded DNA: Stability, conformational flexibility, and ion binding Journal of the American Chemical Society. 114: 5926-5928. |
0.438 |
|
| 1991 |
Rentzeperis D, Kharakoz DP, Marky LA. Coupling of sequential transitions in a DNA double hairpin: Energetics, ion binding, and hydration Biochemistry. 30: 6276-6283. PMID 2059634 DOI: 10.1021/Bi00239A028 |
0.484 |
|
| 1991 |
Marky LA. Differential hydration of dA·dT base pairing and da and dT bulges in deoxyoligonucleotides Biochemistry®. 30: 8018-8026. PMID 1868075 DOI: 10.1021/Bi00246A020 |
0.489 |
|
| 1990 |
Marky LA. Hydration of dA·dT polymers: Role of water in the thermodynamics of ethidium and propidium intercalation Biochemistry®. 29: 4805-4811. PMID 2364060 DOI: 10.1021/Bi00472A009 |
0.344 |
|
| 1989 |
Marky LA, Kupke DW. Probing the hydration of the minor groove of A·T synthetic DNA polymers by volume and heat changes Biochemistry. 28: 9982-9988. PMID 2559775 DOI: 10.1021/Bi00452A016 |
0.425 |
|
| 1988 |
Roe JA, Butler A, Scholler DM, Valentine JS, Marky L, Breslauer KJ. Differential scanning calorimetry of Cu,Zn-superoxide dismutase, the apoprotein, and its zinc-substituted derivatives. Biochemistry. 27: 950-8. PMID 2835081 DOI: 10.1021/Bi00403A017 |
0.58 |
|
| 1988 |
Marky LA, Blumenfeld KS, Breslauer KJ. Differential effect of tetramethylammonium chloride and sodium chloride on duplex melting temperatures of deoxyoligonucleotides: Resolution of a salt effect into specific and non-specific components Canadian Journal of Chemistry. 66: 836-839. DOI: 10.1139/V88-145 |
0.576 |
|
| 1987 |
Marky LA, Kallenbach NR, McDonough KA, Seeman NC, Breslauer KJ. The melting behavior of a DNA junction structure: a calorimetric and spectroscopic study. Biopolymers. 26: 1621-34. PMID 3663876 DOI: 10.1002/Bip.360260912 |
0.615 |
|
| 1987 |
Marky LA, Breslauer KJ. Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves Biopolymers - Peptide Science Section. 26: 1601-1620. PMID 3663875 DOI: 10.1002/Bip.360260911 |
0.573 |
|
| 1987 |
Chou WY, Marky LA, Zaunczkowski D, Breslauer KJ. The thermodynamics of drug-dna interactions: Ethidium bromide and propidium iodide Journal of Biomolecular Structure and Dynamics. 5: 345-362. PMID 3271479 DOI: 10.1080/07391102.1987.10506399 |
0.659 |
|
| 1987 |
Marky LA, Breslauer KJ. Origins of netropsin binding affinity and specificity: correlations of thermodynamic and structural data Proceedings of the National Academy of Sciences of the United States of America. 84: 4359-4363. PMID 3037518 DOI: 10.1073/Pnas.84.13.4359 |
0.682 |
|
| 1987 |
Breslauer KJ, Remeta DP, Chou WY, Ferrante R, Curry J, Zaunczkowski D, Snyder JG, Marky LA. Enthalpy-entropy compensations in drug-DNA binding studies. Proceedings of the National Academy of Sciences of the United States of America. 84: 8922-6. PMID 2827160 DOI: 10.1073/Pnas.84.24.8922 |
0.814 |
|
| 1986 |
Sutherland JC, Lin BH, Mugavero J, Trunk J, Tomasz M, Santella R, Marky L, Breslauer KJ. Vacuum ultraviolet circular dichroism of double stranded nucleic acids. Photochemistry and Photobiology. 44: 295-301. PMID 3786449 DOI: 10.1111/J.1751-1097.1986.Tb04667.X |
0.544 |
|
| 1986 |
Breslauer KJ, Frank R, Blocker H, Marky LA. Predicting DNA duplex stability from the base sequence Proceedings of the National Academy of Sciences of the United States of America. 83: 3746-3750. PMID 3459152 DOI: 10.1073/Pnas.83.11.3746 |
0.685 |
|
| 1985 |
Marky LA, Curry J, Breslauer KJ. Netropsin binding to polyd(AT) X polyd(AT) and to polydA X polydT: a comparative thermodynamic study Progress in Clinical and Biological Research. 172: 155-173. PMID 2986168 |
0.493 |
|
| 1985 |
MOSS RA, HENDRICKSON TF, SWARUP S, HUI Y, MARKY L, BRESLAUER KJ. ChemInform Abstract: TRANSMEMBRANE TRANSPORT OF 1-ANILINO-8-NAPHTHALENESULFONATE IN SIMPLE CATIONIC SURFACTANT VESICLES Chemischer Informationsdienst. 16. DOI: 10.1002/chin.198504169 |
0.465 |
|
| 1984 |
Moss RA, Hendrickson TF, Swarup S, Hui Y, Marky L, Breslauer KJ. Trans-membrane transport of 1-anilino-8-naphthalenesulfonate in simple cationic surfactant vesicles Tetrahedron Letters. 25: 4063-4066. DOI: 10.1016/S0040-4039(01)90182-0 |
0.46 |
|
| 1983 |
Marky LA, Snyder JG, Breslauer KJ. Calorimetric and spectroscopic investigation of drug-DNA interactions: II. Dipyrandlam binding to poly d(AT) Nucleic Acids Research. 11: 5701-5715. PMID 6889134 DOI: 10.1093/Nar/11.16.5701 |
0.77 |
|
| 1983 |
Kuzmich S, Marky LA, Jones RA. Specifically alkylated DNA fragments. Synthesis and physical characterization of D[cGC(o2Me)GCG]and D[cGT(o6Me) GCG] Nucleic Acids Research. 11: 3393-3404. PMID 6856460 DOI: 10.1093/Nar/11.10.3393 |
0.301 |
|
| 1983 |
Marky LA, Blumenfeld KS, Kozlowski S, Breslauer KJ. Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCAATTCGCG): Evidence for hairpin formation Biopolymers. 22: 1247-1257. PMID 6850063 DOI: 10.1002/Bip.360220416 |
0.588 |
|
| 1983 |
Marky LA, Snyder JG, Remeta DP, Breslauer KJ. Thermodynamics of drug-dna interactions Journal of Biomolecular Structure and Dynamics. 1: 487-507. PMID 6400886 DOI: 10.1080/07391102.1983.10507457 |
0.814 |
|
| 1983 |
Marky LA, Blumenfeld KS, Breslauer KJ. Calorimetric and spectroscoptc investigation of drug - DNA interactions. I. The binding of netropsin to poly d(AT) Nucleic Acids Research. 11: 2857-2870. PMID 6304658 DOI: 10.1093/Nar/11.9.2857 |
0.651 |
|
| 1982 |
Marky LA, Breslauer KJ. Calorimetric determination of base-stacking enthalpies in double-helical DNA molecules Biopolymers - Peptide Science Section. 21: 2185-2194. PMID 7171732 DOI: 10.1002/Bip.360211107 |
0.66 |
|
| 1982 |
Gaffney BL, Marky LA, Jones RA. The influence of the purine 2-amino group on DNA conformation and stability. Synthesis and conformational analysis of d[T(2-aminoA)]3 Nucleic Acids Research. 10: 4351-4361. PMID 7122239 DOI: 10.1093/Nar/10.14.4351 |
0.445 |
|
| 1982 |
Patel DJ, Kozlowski SA, Marky LA, Rice JA, Broka C, Itakura K, Breslauer KJ. Structure and energetics of a hexanucleotide duplex with stacked trinucleotide ends formed by the sequence d(GAATTCGCG). Biochemistry. 21: 451-5. PMID 7066297 DOI: 10.1021/Bi00532A005 |
0.607 |
|
| 1982 |
Patel DJ, Kozlowski SA, Marky LA, Rice JA, Broka C, Itakura K, Breslauer KJ. Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution. Biochemistry. 21: 445-51. PMID 7066296 DOI: 10.1021/Bi00532A004 |
0.554 |
|
| 1982 |
Patel DJ, Kozlowski SA, Marky LA, Rice JA, Broka C, Dallas J, Itakura K, Breslauer KJ. Structure, dynamics, and energetics of deoxyguanosine . thymidine wobble base pair formation in the self-complementary d(CGTGAATTCGCG) duplex in solution. Biochemistry. 21: 437-44. PMID 7066295 DOI: 10.1021/Bi00532A003 |
0.589 |
|
| 1982 |
Patel DJ, Kozlowski SA, Marky LA, Broka C, Rice JA, Itakura K, Breslauer KJ. Premelting and melting transitions in the d(CGCGAATTCGCG) self-complementary duplex in solution. Biochemistry. 21: 428-36. PMID 7066294 DOI: 10.1021/Bi00532A002 |
0.569 |
|
| 1981 |
Marky LA, Canuel L, Jones RA, Breslauer KJ. Calorimetric and spectroscopic investigation of the helix-to-coil transition of the self-complementary deoxyribonucleotide ATGCAT Biophysical Chemistry. 13: 141-149. PMID 7260332 DOI: 10.1016/0301-4622(81)80013-0 |
0.594 |
|
| 1981 |
Marky LA, Patel D, Breslauer KJ. Effect of tetramethylammonium ion on the helix-to-coil transition of poly(deoxyadenylylthymidine): A nuclear magnetic resonance and calorimetric investigation Biochemistry. 20: 1427-1431. PMID 7225341 DOI: 10.1021/Bi00509A004 |
0.626 |
|
| 1981 |
Freier SM, Hill KO, Dewey TG, Marky LA, Breslauer KJ, Turner DH. Solvent effects on the kinetics and thermodynamics of stacking in poly(cytidylic acid) Biochemistry. 20: 1419-1426. PMID 7225340 DOI: 10.1021/Bi00509A003 |
0.624 |
|
| 1981 |
Albergo DD, Marky LA, Breslauer KJ, Turner DH. Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide Biochemistry. 20: 1409-1413. PMID 6261793 DOI: 10.1021/Bi00509A001 |
0.599 |
|
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