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David R Slochower - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Biophysics, computational chemistry, molecular machines
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Setiadi J, Boothroyd S, Slochower DR, Dotson DL, Thompson MW, Wagner JR, Wang LP, Gilson MK. Tuning Potential Functions to Host-Guest Binding Data. Journal of Chemical Theory and Computation. PMID 38147689 DOI: 10.1021/acs.jctc.3c01050  0.588
2020 Bradley RP, Slochower DR, Janmey PA, Radhakrishnan R. Divalent cations bind to phosphoinositides to induce ion and isomer specific propensities for nano-cluster initiation in bilayer membranes. Royal Society Open Science. 7: 192208. PMID 32537210 DOI: 10.1098/Rsos.192208  0.581
2020 Rizzi A, Jensen T, Slochower DR, Aldeghi M, Gapsys V, Ntekoumes D, Bosisio S, Papadourakis M, Henriksen NM, de Groot BL, Cournia Z, Dickson A, Michel J, Gilson MK, Shirts MR, et al. The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations. Journal of Computer-Aided Molecular Design. PMID 31984465 DOI: 10.1007/S10822-020-00290-5  0.737
2019 Slochower DR, Henriksen NM, Wang LP, Chodera JD, Mobley DL, Gilson M. Binding thermodynamics of host-guest systems with SMIRNOFF99Frosst 1.0.5 from the Open Force Field Initiative. Journal of Chemical Theory and Computation. PMID 31603667 DOI: 10.1021/Acs.Jctc.9B00748  0.738
2019 Bradley R, Slochower D, Fatunmbi O, Kutti Kandy S, Bucki R, Janmey PA, Radhakrishnan R. Molecular and Continuum Modeling Methods for Understanding the Role of Polyphosphoinositides in Inducing Cellular Morphology Changes Biophysical Journal. 116: 374a. DOI: 10.1016/J.Bpj.2018.11.2033  0.477
2018 Mobley DL, Bannan CC, Rizzi A, Bayly CI, Chodera JD, Lim VT, Lim NM, Beauchamp KA, Slochower DR, Shirts MR, Eastman PK. Escaping atom types in force fields using direct chemical perception. Journal of Chemical Theory and Computation. PMID 30351006 DOI: 10.1021/Acs.Jctc.8B00640  0.311
2018 Slochower DR, Gilson MK. Motor-like Properties of Nonmotor Enzymes. Biophysical Journal. 114: 2174-2179. PMID 29742410 DOI: 10.1016/J.Bpj.2018.02.008  0.533
2016 Yin J, Henriksen NM, Slochower DR, Shirts MR, Chiu MW, Mobley DL, Gilson MK. Overview of the SAMPL5 host-guest challenge: Are we doing better? Journal of Computer-Aided Molecular Design. PMID 27658802 DOI: 10.1007/S10822-016-9974-4  0.734
2016 Yin J, Henriksen NM, Slochower DR, Gilson MK. The SAMPL5 host-guest challenge: computing binding free energies and enthalpies from explicit solvent simulations by the attach-pull-release (APR) method. Journal of Computer-Aided Molecular Design. PMID 27638809 DOI: 10.1007/S10822-016-9970-8  0.739
2015 Smith JR, Galie PA, Slochower DR, Weisshaar CL, Janmey PA, Winkelstein BA. Salmon-derived thrombin inhibits development of chronic pain through an endothelial barrier protective mechanism dependent on APC. Biomaterials. 80: 96-105. PMID 26708087 DOI: 10.1016/J.Biomaterials.2015.11.062  0.437
2015 Slochower DR, Wang YH, Radhakrishnan R, Janmey PA. Physical chemistry and membrane properties of two phosphatidylinositol bisphosphate isomers. Physical Chemistry Chemical Physics : Pccp. 17: 12608-15. PMID 25901568 DOI: 10.1039/C5Cp00862J  0.711
2014 Janmey PA, Slochower DR, Wang YH, Wen Q, CÄ“bers A. Polyelectrolyte properties of filamentous biopolymers and their consequences in biological fluids. Soft Matter. 10: 1439-49. PMID 24651463 DOI: 10.1039/C3Sm50854D  0.706
2014 Slochower DR, Wang YH, Tourdot RW, Radhakrishnan R, Janmey PA. Counterion-mediated pattern formation in membranes containing anionic lipids. Advances in Colloid and Interface Science. 208: 177-88. PMID 24556233 DOI: 10.1016/J.Cis.2014.01.016  0.71
2014 Wang YH, Slochower DR, Janmey PA. Counterion-mediated cluster formation by polyphosphoinositides. Chemistry and Physics of Lipids. 182: 38-51. PMID 24440472 DOI: 10.1016/J.Chemphyslip.2014.01.001  0.726
2013 Slochower DR, Huwe PJ, Radhakrishnan R, Janmey PA. Quantum and all-atom molecular dynamics simulations of protonation and divalent ion binding to phosphatidylinositol 4,5-bisphosphate (PIP2). The Journal of Physical Chemistry. B. 117: 8322-9. PMID 23786273 DOI: 10.1021/Jp401414Y  0.568
2011 Donald JE, Zhang Y, Fiorin G, Carnevale V, Slochower DR, Gai F, Klein ML, DeGrado WF. Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion. Proceedings of the National Academy of Sciences of the United States of America. 108: 3958-63. PMID 21321234 DOI: 10.1073/Pnas.1019668108  0.377
2011 Slochower DR, Janmey PA. Molecular Dynamics Simulations of Monolayers and Membranes with Phosphatidylinositol Bisphosphate Biophysical Journal. 100: 88a. DOI: 10.1016/J.Bpj.2010.12.684  0.583
2011 Fiorin G, Donald JE, Zhang Y, Carnevale V, Slochower DR, Gai F, Klein ML, DeGrado WF. Association of Transmembrane Helices in Viral Fusion Peptides Suggests a Protein-Centric Mechanism of Membrane Fusion Biophysical Journal. 100: 633a. DOI: 10.1016/J.Bpj.2010.12.3637  0.375
2010 Moravcevic K, Mendrola JM, Schmitz KR, Wang YH, Slochower D, Janmey PA, Lemmon MA. Kinase associated-1 domains drive MARK/PAR1 kinases to membrane targets by binding acidic phospholipids Cell. 143: 966-977. PMID 21145462 DOI: 10.1016/J.Cell.2010.11.028  0.691
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