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Andrej Lupták, Ph.D. - Publications

Affiliations: 
Chemistry, Molecular Biology & Biochemistry University of California, Irvine, Irvine, CA 
Area:
Chemical biology, RNA
Website:
http://www.chem.uci.edu/~aluptak/
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Chen CC, Han J, Chinn CA, Rounds JS, Li X, Nikan M, Myszka M, Tong L, Passalacqua LFM, Bredy T, Wood MA, Luptak A. Inhibition of ribozyme elevates CPEB3 protein expression and polyadenylation of its target mRNAs, and enhances object location memory. Elife. 13. PMID 38319152 DOI: 10.7554/eLife.90116  0.31
2023 Chen CC, Han J, Chinn CA, Rounds JS, Li X, Nikan M, Myszka M, Tong L, Passalacqua LFM, Bredy TW, Wood MA, Lupták A. Inhibition of CPEB3 ribozyme elevates CPEB3 protein expression and polyadenylation of its target mRNAs, and enhances object location memory. Biorxiv : the Preprint Server For Biology. PMID 37333407 DOI: 10.1101/2023.06.07.543953  0.31
2022 Cole KH, Bouin A, Ruiz C, Semler BL, Inlay MA, Lupták A. Single-tube collection and nucleic acid analysis of clinical samples for SARS-CoV-2 saliva testing. Scientific Reports. 12: 3951. PMID 35273232 DOI: 10.1038/s41598-022-07871-4  0.75
2021 Peng H, Latifi B, Müller S, Lupták A, Chen IA. Self-cleaving ribozymes: substrate specificity and synthetic biology applications. Rsc Chemical Biology. 2: 1370-1383. PMID 34704043 DOI: 10.1039/d0cb00207k  0.677
2021 Chizzolini F, Kent AD, Passalacqua LFM, Lupták A. Enzymatic RNA Production from NTPs Synthesized from Nucleosides and Trimetaphosphate*. Chembiochem : a European Journal of Chemical Biology. PMID 33798271 DOI: 10.1002/cbic.202100085  0.332
2021 Passalacqua LFM, Lupták A. Co-transcriptional Analysis of Self-Cleaving Ribozymes and Their Ligand Dependence. Methods in Molecular Biology (Clifton, N.J.). 2167: 13-24. PMID 32712912 DOI: 10.1007/978-1-0716-0716-9_2  0.51
2020 Passalacqua LFM, Dingilian AI, Luptak A. Single-pass transcription by T7 RNA polymerase. Rna (New York, N.Y.). PMID 32958559 DOI: 10.1261/Rna.076778.120  0.454
2020 Rotstan KA, Abdelsayed MM, Passalacqua LFM, Chizzolini F, Sudarshan K, Chamberlin AR, Míšek J, Luptak A. Regulation of mRNA translation by a photoriboswitch. Elife. 9. PMID 32053109 DOI: 10.7554/Elife.51737  0.496
2019 Chizzolini F, Passalacqua LFM, Oumais M, Dingilian AI, Szostak JW, Lupták A. Large phenotypic enhancement of structured random RNA pools. Journal of the American Chemical Society. PMID 31887027 DOI: 10.1021/Jacs.9B11396  0.743
2019 Cole KH, Lupták A. High-throughput methods in aptamer discovery and analysis. Methods in Enzymology. 621: 329-346. PMID 31128787 DOI: 10.1016/Bs.Mie.2019.02.009  0.777
2018 Webb JC, Lupták A. Kinetic Parameters of Trans-scission by Extended HDV-like Ribozymes and the Prospect for the Discovery of Genomic Trans-cleaving RNAs. Biochemistry. PMID 29388767 DOI: 10.1021/Acs.Biochem.7B00789  0.605
2018 Burke CR, Lupták A. DNA synthesis from diphosphate substrates by DNA polymerases. Proceedings of the National Academy of Sciences of the United States of America. PMID 29339523 DOI: 10.1073/Pnas.1712193115  0.644
2017 Passalacqua LFM, Jimenez RM, Fong JY, Luptak A. Allosteric modulation of F. prausnitzii HDV-like ribozyme by glucosamine 6-phosphate ¬¬- the substrate of the adjacent gene product. Biochemistry. PMID 29045794 DOI: 10.1021/Acs.Biochem.7B00879  0.403
2017 Abdelsayed MM, Ho BT, Vu MMK, Polanco J, Spitale RC, Luptak A. Multiplex aptamer discovery through Apta-Seq and its application to ATP aptamers derived from human-genomic SELEX. Acs Chemical Biology. PMID 28661647 DOI: 10.1021/Acschembio.7B00001  0.531
2016 Webb CH, Nguyen D, Myszka M, Lupták A. Topological constraints of structural elements in regulation of catalytic activity in HDV-like self-cleaving ribozymes. Scientific Reports. 6: 28179. PMID 27302490 DOI: 10.1038/Srep28179  0.64
2016 Rampášek L, Jimenez RM, Lupták A, Vinař T, Brejová B. RNA motif search with data-driven element ordering. Bmc Bioinformatics. 17: 216. PMID 27188396 DOI: 10.1186/S12859-016-1074-X  0.504
2016 Pobanz K, Lupták A. Improving the odds: Influence of starting pools on in vitro selection outcomes. Methods (San Diego, Calif.). PMID 27109058 DOI: 10.1016/J.Ymeth.2016.04.021  0.373
2015 Jimenez RM, Polanco JA, Lupták A. Chemistry and Biology of Self-Cleaving Ribozymes. Trends in Biochemical Sciences. 40: 648-61. PMID 26481500 DOI: 10.1016/J.Tibs.2015.09.001  0.524
2015 Long A, Liti G, Luptak A, Tenaillon O. Elucidating the molecular architecture of adaptation via evolve and resequence experiments. Nature Reviews. Genetics. PMID 26347030 DOI: 10.1038/Nrg3937  0.339
2014 Ho B, Polanco J, Jimenez R, Lupták A. Discovering human RNA aptamers by structure-based bioinformatics and genome-based in vitro selection. Methods in Enzymology. 549: 29-46. PMID 25432743 DOI: 10.1016/B978-0-12-801122-5.00002-7  0.491
2014 Riccitelli NJ, Delwart E, Lupták A. Identification of minimal HDV-like ribozymes with unique divalent metal ion dependence in the human microbiome Biochemistry. 53: 1616-1626. PMID 24555915 DOI: 10.1021/Bi401717W  0.775
2014 Ho B, Polanco J, Jimenez R, Lupták A. Discovering human RNA aptamers by structure-based bioinformatics and genome-based in vitro selection Methods in Enzymology. 549: 29-46. DOI: 10.1016/B978-0-12-801122-5.00002-7  0.382
2013 Riccitelli N, Lupták A. HDV family of self-cleaving ribozymes Progress in Molecular Biology and Translational Science. 120: 123-171. PMID 24156943 DOI: 10.1016/B978-0-12-381286-5.00004-4  0.816
2012 Vu MM, Jameson NE, Masuda SJ, Lin D, Larralde-Ridaura R, Lupták A. Convergent evolution of adenosine aptamers spanning bacterial, human, and random sequences revealed by structure-based bioinformatics and genomic SELEX. Chemistry & Biology. 19: 1247-54. PMID 23102219 DOI: 10.1016/J.Chembiol.2012.08.010  0.4
2012 Hammann C, Luptak A, Perreault J, de la Peña M. The ubiquitous hammerhead ribozyme. Rna (New York, N.Y.). 18: 871-85. PMID 22454536 DOI: 10.1261/Rna.031401.111  0.541
2012 Jimenez RM, Rampášek L, Brejová B, Vinař T, Lupták A. Discovery of RNA motifs using a computational pipeline that allows insertions in paired regions and filtering of candidate sequences Methods in Molecular Biology. 848: 145-158. PMID 22315068 DOI: 10.1007/978-1-61779-545-9_10  0.499
2012 Jimenez RM, Lupták A. Structure-based search and in vitro analysis of self-cleaving ribozymes Methods in Molecular Biology. 848: 131-143. PMID 22315067 DOI: 10.1007/978-1-61779-545-9_9  0.542
2011 Ruminski DJ, Webb CH, Riccitelli NJ, Lupták A. Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes. The Journal of Biological Chemistry. 286: 41286-95. PMID 21994949 DOI: 10.1074/Jbc.M111.297283  0.737
2011 Trevino SG, Zhang N, Elenko MP, Lupták A, Szostak JW. Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity Proceedings of the National Academy of Sciences of the United States of America. 108: 13492-13497. PMID 21825162 DOI: 10.1073/Pnas.1107113108  0.77
2011 Webb CHT, Lupták A. HDV-like self-cleaving ribozymes. Rna Biology. 8: 719-727. PMID 21734469 DOI: 10.4161/Rna.8.5.16226  0.744
2011 Sendroiu IE, Gifford LK, Lupták A, Corn RM. Ultrasensitive DNA microarray biosensing via in situ RNA transcription-based amplification and nanoparticle-enhanced SPR imaging. Journal of the American Chemical Society. 133: 4271-3. PMID 21391582 DOI: 10.1021/Ja2005576  0.803
2011 Jimenez RM, Delwart E, Lupták A. Structure-based search reveals hammerhead ribozymes in the human microbiome Journal of Biological Chemistry. 286: 7737-7743. PMID 21257745 DOI: 10.1074/Jbc.C110.209288  0.534
2010 Gifford LK, Sendroiu IE, Corn RM, Lupták A. Attomole detection of mesophilic DNA polymerase products by nanoparticle-enhanced surface plasmon resonance imaging on glassified gold surfaces. Journal of the American Chemical Society. 132: 9265-7. PMID 20565098 DOI: 10.1021/Ja103043P  0.754
2010 Riccitelli NJ, Lupták A. Computational discovery of folded RNA domains in genomes and in vitro selected libraries Methods. 52: 133-140. PMID 20554049 DOI: 10.1016/J.Ymeth.2010.06.005  0.811
2010 Ruminski DJ, Webb CT, Riccitelli NJ, Luptak A. Processing of insect retrotransposons by self-cleaving ribozymes Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4333.1  0.789
2009 Webb CHT, Riccitelli NJ, Ruminski DJ, Lupták A. Widespread occurrence of self-cleaving ribozymes Science. 326: 953. PMID 19965505 DOI: 10.1126/Science.1178084  0.76
2007 Monnard PA, Luptak A, Deamer DW. Models of primitive cellular life: polymerases and templates in liposomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 362: 1741-50. PMID 17472931 DOI: 10.1098/Rstb.2007.2066  0.415
2006 Salehi-Ashtiani K, Lupták A, Litovchick A, Szostak JW. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene Science. 313: 1788-1792. PMID 16990549 DOI: 10.1126/Science.1129308  0.738
2004 Lupták A, Doudna JA. Distinct sites of phosphorothioate substitution interfere with folding and splicing of the Anabaena group I intron. Nucleic Acids Research. 32: 2272-80. PMID 15107495 DOI: 10.1093/Nar/Gkh548  0.703
2001 Lupták A, Ferré-D'Amaré AR, Zhou K, Zilm KW, Doudna JA. Direct pK(a) measurement of the active-site cytosine in a genomic hepatitis delta virus ribozyme. Journal of the American Chemical Society. 123: 8447-52. PMID 11525650 DOI: 10.1021/Ja016091X  0.734
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