Samuel S. Minot, Ph.D.
Affiliations: | 2012 | Cell and Molecular Biology | University of Pennsylvania, Philadelphia, PA, United States |
Area:
Bioinformatics, Molecular Biology, ImmunologyGoogle:
"Samuel Minot"Parents
Sign in to add mentor| Frederic D. Bushman | grad student | 2012 | Penn | |
| (Evolution and dynamics of the human gut virome.) | ||||
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Publications
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| Rashidi A, Gem H, McLean JS, et al. (2024) Multi-cohort shotgun metagenomic analysis of oral and gut microbiota overlap in healthy adults. Scientific Data. 11: 75 |
| Lee EM, Srinivasan S, Purvine SO, et al. (2023) Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome. Msystems. e0067822 |
| Flores Ramos S, Brugger SD, Escapa IF, et al. (2021) Genomic Stability and Genetic Defense Systems in , a Candidate Beneficial Bacterium from the Human Microbiome. Msystems. e0042521 |
| Minot SS, Barry KC, Kasman C, et al. (2021) geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response. Genome Biology. 22: 135 |
| Golob JL, Minot SS. (2020) In silico benchmarking of metagenomic tools for coding sequence detection reveals the limits of sensitivity and precision. Bmc Bioinformatics. 21: 459 |
| Peddu V, Shean RC, Xie H, et al. (2020) Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization. Clinical Chemistry |
| Willis AD, Minot SS. (2020) Strategies to Facilitate Translational Advances from Microbiome Surveys. Trends in Microbiology. 28: 329-330 |
| Minot SS, Willis AD. (2019) Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease. Microbiome. 7: 110 |
| Minot SS. (2019) De novo Assembly Vastly Expands the Known Microbial Universe. Trends in Microbiology |
| McIntyre ABR, Ounit R, Afshinnekoo E, et al. (2017) Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. 18: 182 |