Karen E. Ocwieja, Ph.D.
Affiliations: | 2012 | Cell and Molecular Biology | University of Pennsylvania, Philadelphia, PA, United States |
Area:
Bioinformatics, Molecular Biology, ImmunologyGoogle:
"Karen Ocwieja"Parents
Sign in to add mentor| Frederic D. Bushman | grad student | 2012 | Penn | |
| (Patterns of HIV integration and splicing: Windows on mechanism.) | ||||
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Publications
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| Ocwieja K, Stanton A, Richards A, et al. (2019) 973. Single-cell RNA Sequencing Analysis of Zika Virus Infection in Human Stem Cell-Derived Cerebral Organoids Open Forum Infectious Diseases. 6: S33-S34 |
| Gijsbers R, Vets S, De Rijck J, et al. (2018) Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting. The Journal of Biological Chemistry. 293: 114 |
| Sherrill-Mix S, Ocwieja KE, Bushman FD. (2015) Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats. Retrovirology. 12: 79 |
| Ocwieja KE, Sherrill-Mix S, Liu C, et al. (2015) A reverse transcription loop-mediated isothermal amplification assay optimized to detect multiple HIV subtypes. Plos One. 10: e0117852 |
| Berry CC, Ocwieja KE, Malani N, et al. (2014) Comparing DNA integration site clusters with scan statistics. Bioinformatics (Oxford, England). 30: 1493-500 |
| Sherrill-Mix S, Lewinski MK, Famiglietti M, et al. (2013) HIV latency and integration site placement in five cell-based models. Retrovirology. 10: 90 |
| Ocwieja KE, Sherrill-Mix S, Mukherjee R, et al. (2012) Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing. Nucleic Acids Research. 40: 10345-55 |
| Bushman FD, Brady T, Malani N, et al. (2012) 134 HIV DNA Integration Jaids Journal of Acquired Immune Deficiency Syndromes. 59: 55 |
| Schaller T, Ocwieja KE, Rasaiyaah J, et al. (2011) HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency Plos Pathogens. 7 |
| Gijsbers R, Vets S, De Rijck J, et al. (2011) Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting. The Journal of Biological Chemistry. 286: 41812-25 |