Daniel Mende
Affiliations: | Structural and Computational Biology | European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany |
Website:
http://www.embl.de/research/units/scb/bork/members/index.php?s_personId=5768Google:
"Daniel Mende"Cross-listing: Chemistry Tree
Parents
Sign in to add mentor| Peer Bork | grad student | 2009- | European Molecular Biology Laboratory (EMBL) |
| Edward F. DeLong | post-doc | (Chemistry Tree) |
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Publications
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| Dmitrijeva M, Ruscheweyh HJ, Feer L, et al. (2024) The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities. Nucleic Acids Research |
| Schmidt TSB, Fullam A, Ferretti P, et al. (2023) SPIRE: a Searchable, Planetary-scale mIcrobiome REsource. Nucleic Acids Research |
| Ruscheweyh HJ, Milanese A, Paoli L, et al. (2022) Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments. Microbiome. 10: 212 |
| Fullam A, Letunic I, Schmidt TSB, et al. (2022) proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic Acids Research |
| Hernández-Plaza A, Szklarczyk D, Botas J, et al. (2022) eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic Acids Research |
| Meyer F, Fritz A, Deng ZL, et al. (2022) Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods. 19: 429-440 |
| Bongrand C, Koch E, Mende D, et al. (2022) Evidence of Genomic Diversification in a Natural Symbiotic Population Within Its Host. Frontiers in Microbiology. 13: 854355 |
| van der Putten BCL, Huijsmans NAH, Mende DR, et al. (2022) Benchmarking the topological accuracy of bacterial phylogenomic workflows using evolution. Microbial Genomics. 8 |
| Muratore D, Boysen AK, Harke MJ, et al. (2022) Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. Nature Ecology & Evolution |
| Coelho LP, Alves R, Del Río ÁR, et al. (2021) Towards the biogeography of prokaryotic genes. Nature |