Mark B. Gerstein
Affiliations: | Molecular Biophysics and Biochemistry | Yale University, New Haven, CT |
Area:
Computational Biology and BioinformaticsWebsite:
https://sites.gersteinlab.org/research/Google:
"Mark Gerstein"Bio:
http://www.gersteinlab.org/
Cross-listing: Chemistry Tree
Parents
Sign in to add mentor| Cyrus H. Chothia | grad student | 1993 | Cambridge | |
| Ruth M. Lynden-Bell | grad student | 1993 | Cambridge (Chemistry Tree) | |
| (Protein recognition: surfaces and conformational change) | ||||
| Michael Levitt | post-doc | 1993-1996 | Stanford | |
Children
Sign in to add trainee| Paul Bertone | grad student | Cambridge | |
| Donghoon Lee | grad student | Yale | |
| Werner G. Krebs | grad student | 1996-2001 | Yale |
| Ronald Jansen | grad student | 2002 | Yale |
| Rajdeep Das | grad student | 2003 | Yale |
| Vadim Alexandrov | grad student | 2004 | Yale |
| Dov Greenbaum | grad student | 2004 | Yale |
| Haiyuan Yu | grad student | 2005 | Yale |
| Thomas E. Royce | grad student | 2007 | Yale |
| Michael R. Seringhaus | grad student | 2007 | Yale |
| Samuel C. Flores | grad student | 2008 | Yale |
| Tara A. Gianoulis | grad student | 2009 | Yale |
| Yuk L. Yip | grad student | 2009 | Yale |
| Jiang Du | grad student | 2010 | Yale |
| Hugo Y. Lam | grad student | 2010 | Yale |
| Prianka Patel | grad student | 2010 | Yale |
| Chong Shou | grad student | 2011 | Yale |
| Raymond K. Auerbach | grad student | 2012 | Yale |
| Lukas Habegger | grad student | 2012 | Yale |
| Xinmeng Mu | grad student | 2012 | Yale |
| Jieming Chen | grad student | 2010-2016 | |
| Yu Xia | post-doc | Yale | |
| Gamze Gursoy | post-doc | 2016- | Yale (BME Tree) |
| Xiangmeng Kong | post-doc | 2017- | Yale (Chemistry Tree) |
| ZhaoLei Zhang | post-doc | 2001-2004 | Yale (Chemistry Tree) |
| Alberto Paccanaro | post-doc | 2003-2006 | Yale (Neurotree) |
| Jan O. Korbel | post-doc | 2005-2007 | European Molecular Biology Laboratory (EMBL) |
| Yan Zhang | post-doc | 2012-2016 | Yale (Chemistry Tree) |
| Xu Shi | post-doc | 2017-2019 | Yale |
BETA: Related publications
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Publications
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| Emani PS, Geradi MN, Gürsoy G, et al. (2023) Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases. Genome Research. 33: 2156-73 |
| Greenbaum D, Gerstein M. (2023) Resisting efficiency's overreach Riverhead Books, 2023. 256 pp. Science (New York, N.Y.). 381: 1162 |
| Greenbaum D, Gerstein M. (2023) Calculating the future Doubleday, 2023. 352 pp. Science (New York, N.Y.). 380: 589 |
| Rozowsky J, Gao J, Borsari B, et al. (2023) The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Cell. 186: 1493-1511.e40 |
| Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, et al. (2023) Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nature Genetics |
| Sarkar E, Chielle E, Gursoy G, et al. (2023) Privacy-preserving cancer type prediction with homomorphic encryption. Scientific Reports. 13: 1661 |
| Rheinbay E, Nielsen MM, Abascal F, et al. (2023) Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature |
| Chen Z, Zhang B, Guo H, et al. (2023) Binding Peptide Generation for MHC Class I Proteins with Deep Reinforcement Learning. Bioinformatics (Oxford, England) |
| Erwin GS, Gürsoy G, Al-Abri R, et al. (2022) Recurrent repeat expansions in human cancer genomes. Nature. 613: 96-102 |
| Greenbaum D, Gerstein M. (2022) GATTACA is still pertinent 25 years later. Nature Genetics |