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| Loewenstein Y, Raimondo D, Redfern OC, et al. (2009) Protein function annotation by homology-based inference. Genome Biology. 10: 207 |
| Watson JD, Thornton JM. (2009) Protein function prediction from structure in structural genomics and its contribution to the study of health and disease Nato Science For Peace and Security Series a: Chemistry and Biology. 201-215 |
| Watson JD, Thornton JM. (2009) Case studies: Function predictions of structural genomics results From Protein Structure to Function With Bioinformatics. 273-291 |
| Watson JD, Thornton JM. (2009) Protein function prediction from structure in structural genomics and its contribution to the study of health and disease Nato Science For Peace and Security Series a: Chemistry and Biology. 201-215 |
| Watson JD, Thornton JM, Tress ML, et al. (2008) Structure to function Modern Genome Annotation: the Biosapiens Network. 239-262 |
| Cuff ME, Li H, Moy S, et al. (2007) Crystal structure of an acetyltransferase protein from Vibrio cholerae strain N16961 Proteins: Structure, Function and Genetics. 69: 422-427 |
| Tress ML, Martelli PL, Frankish A, et al. (2007) The implications of alternative splicing in the ENCODE protein complement. Proceedings of the National Academy of Sciences of the United States of America. 104: 5495-500 |
| Watson JD, Sanderson S, Ezersky A, et al. (2007) Towards fully automated structure-based function prediction in structural genomics: a case study. Journal of Molecular Biology. 367: 1511-22 |
| Albeck S, Alzari P, Andreini C, et al. (2006) SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallographica. Section D, Biological Crystallography. 62: 1184-95 |
| Laskowski RA, Watson JD, Thornton JM. (2005) Protein function prediction using local 3D templates. Journal of Molecular Biology. 351: 614-26 |