Tal Pupko
Affiliations: | Cell Research and Immunology, George S Wise Faculty of Life Sciences | Tel Aviv University, Tel Aviv-Yafo, Tel Aviv District, Israel |
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"Tal Pupko"
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| Dotan E, Wygoda E, Ecker N, et al. (2025) BetaAlign: a deep learning approach for multiple sequence alignment. Bioinformatics (Oxford, England). 41 |
| Geraffi N, Gupta P, Wagner N, et al. (2023) Comparative sequence analysis of pPATH pathogenicity plasmids in gall-forming bacteria. Frontiers in Plant Science. 14: 1198160 |
| Yariv B, Yariv E, Kessel A, et al. (2023) Using evolutionary data to make sense of macromolecules with a 'face-lifted' ConSurf. Protein Science : a Publication of the Protein Society. e4582 |
| Loewenthal G, Wygoda E, Nagar N, et al. (2022) The evolutionary dynamics that retain long neutral genomic sequences in face of indel deletion bias: a model and its application to human introns. Open Biology. 12: 220223 |
| Ecker N, Azouri D, Bettisworth B, et al. (2022) A LASSO-based approach to sample sites for phylogenetic tree search. Bioinformatics (Oxford, England). 38: i118-i124 |
| Nagar N, Ben Tal N, Pupko T. (2022) EvoRator: Prediction of Residue-level Evolutionary Rates from Protein Structures Using Machine Learning. Journal of Molecular Biology. 434: 167538 |
| Loewenthal G, Rapoport D, Avram O, et al. (2021) A probabilistic model for indel evolution: differentiating insertions from deletions. Molecular Biology and Evolution |
| Abadi S, Avram O, Rosset S, et al. (2020) ModelTeller: model selection for optimal phylogenetic reconstruction using machine learning. Molecular Biology and Evolution |
| Jiménez-Guerrero I, Pérez-Montaño F, Da Silva GM, et al. (2019) Show me your secret(ed) weapons: a multifaceted approach reveals a wide arsenal of type III-secreted effectors in the cucurbit pathogenic bacterium Acidovorax citrulli and novel effectors in the Acidovorax genus. Molecular Plant Pathology |
| Avram O, Rapoport D, Portugez S, et al. (2019) M1CR0B1AL1Z3R-a user-friendly web server for the analysis of large-scale microbial genomics data. Nucleic Acids Research |