Tal Pupko
Affiliations: | Cell Research and Immunology, George S Wise Faculty of Life Sciences | Tel Aviv University, Tel Aviv-Yafo, Tel Aviv District, Israel |
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"Tal Pupko"
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Geraffi N, Gupta P, Wagner N, et al. (2023) Comparative sequence analysis of pPATH pathogenicity plasmids in gall-forming bacteria. Frontiers in Plant Science. 14: 1198160 |
Yariv B, Yariv E, Kessel A, et al. (2023) Using evolutionary data to make sense of macromolecules with a 'face-lifted' ConSurf. Protein Science : a Publication of the Protein Society. e4582 |
Loewenthal G, Wygoda E, Nagar N, et al. (2022) The evolutionary dynamics that retain long neutral genomic sequences in face of indel deletion bias: a model and its application to human introns. Open Biology. 12: 220223 |
Nagar N, Ben Tal N, Pupko T. (2022) EvoRator: Prediction of Residue-level Evolutionary Rates from Protein Structures Using Machine Learning. Journal of Molecular Biology. 434: 167538 |
Abadi S, Avram O, Rosset S, et al. (2020) ModelTeller: model selection for optimal phylogenetic reconstruction using machine learning. Molecular Biology and Evolution |
Jiménez-Guerrero I, Pérez-Montaño F, Da Silva GM, et al. (2019) Show me your secret(ed) weapons: a multifaceted approach reveals a wide arsenal of type III-secreted effectors in the cucurbit pathogenic bacterium Acidovorax citrulli and novel effectors in the Acidovorax genus. Molecular Plant Pathology |
Avram O, Rapoport D, Portugez S, et al. (2019) M1CR0B1AL1Z3R-a user-friendly web server for the analysis of large-scale microbial genomics data. Nucleic Acids Research |
Abadi S, Azouri D, Pupko T, et al. (2019) Model selection may not be a mandatory step for phylogeny reconstruction. Nature Communications. 10: 934 |
Moshe A, Pupko T. (2019) Ancestral sequence reconstruction: accounting for structural information by averaging over replacement matrices. Bioinformatics (Oxford, England). 35: 2562-2568 |
Levy Karin E, Ashkenazy H, Hein J, et al. (2019) A Simulation-Based Approach to Statistical Alignment. Systematic Biology. 68: 252-266 |