Monica Berrondo, Ph.D.
Affiliations: | 2010 | Johns Hopkins University, Baltimore, MD |
Area:
General Biophysics, Chemical EngineeringGoogle:
"Monica Berrondo"Parents
Sign in to add mentorJeffrey J. Gray | grad student | 2010 | Johns Hopkins | |
(Predicting the structure and function of protein mutants.) | ||||
Marc Ostermeier | grad student | 2010 | Johns Hopkins (Chemistry Tree) |
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Publications
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Berrondo M, Kaufmann S, Berrondo M. (2014) Automated Aufbau of antibody structures from given sequences using Macromoltek's SmrtMolAntibody. Proteins. 82: 1636-45 |
Miklos AE, Kluwe C, Der BS, et al. (2012) Structure-based design of supercharged, highly thermoresistant antibodies. Chemistry & Biology. 19: 449-55 |
Berrondo M, Gray JJ. (2011) Computed structures of point deletion mutants and their enzymatic activities Proteins: Structure, Function and Bioinformatics. 79: 2844-2860 |
Chaudhury S, Berrondo M, Weitzner BD, et al. (2011) Benchmarking and analysis of protein docking performance in Rosetta v3.2. Plos One. 6: e22477 |
Leaver-Fay A, Tyka M, Lewis SM, et al. (2011) ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. Methods in Enzymology. 487: 545-74 |
Sircar A, Chaudhury S, Kilambi KP, et al. (2010) A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19 Proteins: Structure, Function and Bioinformatics. 78: 3115-3123 |
Berrondo M, Gray JJ, Schleif R. (2010) Computational Predictions of the Mutant Behavior of AraC Journal of Molecular Biology. 398: 462-470 |
Berrondo M, Ostermeier M, Gray JJ. (2008) Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains Structure. 16: 513-527 |
Chaudhury S, Sircar A, Sivasubramanian A, et al. (2007) Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12 Proteins: Structure, Function and Genetics. 69: 793-800 |