| Year |
Citation |
Score |
| 2023 |
Dicks J, Fazal MA, Oliver K, Grayson NE, Turnbull JD, Bane E, Burnett E, Deheer-Graham A, Holroyd N, Kaushal D, Keane J, Langridge G, Lomax J, McGregor H, Picton S, et al. NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource. Microbial Genomics. 9. PMID 37194944 DOI: 10.1099/mgen.0.000976 |
0.365 |
|
| 2021 |
Argimón S, Yeats CA, Goater RJ, Abudahab K, Taylor B, Underwood A, Sánchez-Busó L, Wong VK, Dyson ZA, Nair S, Park SE, Marks F, Page AJ, Keane JA, Baker S, et al. A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch. Nature Communications. 12: 2879. PMID 34001879 DOI: 10.1038/s41467-021-23091-2 |
0.446 |
|
| 2020 |
Wangwiwatsin A, Protasio AV, Wilson S, Owusu C, Holroyd NE, Sanders MJ, Keane J, Doenhoff MJ, Rinaldi G, Berriman M. Transcriptome of the parasitic flatworm Schistosoma mansoni during intra-mammalian development. Plos Neglected Tropical Diseases. 14: e0007743. PMID 32374726 DOI: 10.1371/Journal.Pntd.0007743 |
0.591 |
|
| 2018 |
Page AJ, Wailan A, Shao Y, Judge K, Dougan G, Klemm EJ, Thomson NR, Keane JA. PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data. Microbial Genomics. PMID 29533742 DOI: 10.1099/mgen.0.000164 |
0.499 |
|
| 2017 |
Hunt M, Mather AE, Sánchez-Busó L, Page AJ, Parkhill J, Keane JA, Harris SR. ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads. Microbial Genomics. 3: e000131. PMID 29177089 DOI: 10.1099/mgen.0.000131 |
0.601 |
|
| 2017 |
Page AJ, Alikhan NF, Carleton HA, Seemann T, Keane JA, Katz LS. Comparison of classical multi-locus sequence typing software for next-generation sequencing data. Microbial Genomics. 3: e000124. PMID 29026660 DOI: 10.1099/mgen.0.000124 |
0.309 |
|
| 2016 |
Page AJ, De Silva N, Hunt M, Quail MA, Parkhill J, Harris SR, Otto TD, Keane JA. Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data. Microbial Genomics. 2: e000083. PMID 28348874 DOI: 10.1099/mgen.0.000083 |
0.675 |
|
| 2016 |
Barquist L, Mayho M, Cummins C, Cain AK, Boinett C, Page AJ, Langridge GC, Quail MA, Keane JA, Parkhill J. The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. Bioinformatics (Oxford, England). PMID 26794317 DOI: 10.1093/bioinformatics/btw022 |
0.401 |
|
| 2015 |
Hunt M, Silva ND, Otto TD, Parkhill J, Keane JA, Harris SR. Circlator: automated circularization of genome assemblies using long sequencing reads. Genome Biology. 16: 294. PMID 26714481 DOI: 10.1186/s13059-015-0849-0 |
0.663 |
|
| 2015 |
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics (Oxford, England). PMID 26198102 DOI: 10.1093/bioinformatics/btv421 |
0.66 |
|
| 2015 |
Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. IVA: accurate de novo assembly of RNA virus genomes. Bioinformatics (Oxford, England). 31: 2374-6. PMID 25725497 DOI: 10.1093/Bioinformatics/Btv120 |
0.631 |
|
| 2015 |
Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, Bentley SD, Parkhill J, Harris SR. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Research. 43: e15. PMID 25414349 DOI: 10.1093/nar/gku1196 |
0.455 |
|
| 2013 |
Tsai IJ, Zarowiecki M, Holroyd N, Garciarrubio A, Sanchez-Flores A, Brooks KL, Tracey A, Bobes RJ, Fragoso G, Sciutto E, Aslett M, Beasley H, Bennett HM, Cai J, Camicia F, ... ... Keane JA, et al. The genomes of four tapeworm species reveal adaptations to parasitism. Nature. 496: 57-63. PMID 23485966 DOI: 10.1038/Nature12031 |
0.656 |
|
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