Barry Demchak, Ph.D.
Affiliations: | 2013 | Computer Science and Engineering | University of California, San Diego, La Jolla, CA |
Area:
Computer ScienceGoogle:
"Barry Demchak"Parents
Sign in to add mentorIngolf Kruger | grad student | 2013 | UCSD | |
(Policy Driven Development: SOA Evolvability through Late Binding.) |
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Publications
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Gustavsen JA, Pai S, Isserlin R, et al. (2019) RCy3: Network biology using Cytoscape from within R. F1000research. 8: 1774 |
Otasek D, Morris JH, Bouças J, et al. (2019) Cytoscape Automation: empowering workflow-based network analysis. Genome Biology. 20: 185 |
Yu MK, Ma J, Ono K, et al. (2019) DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies. Cell Systems |
Settle B, Otasek D, Morris JH, et al. (2018) aMatReader: Importing adjacency matrices via Cytoscape Automation. F1000research. 7: 823 |
Settle B, Otasek D, Morris JH, et al. (2018) Copycat Layout: Network layout alignment via Cytoscape Automation. F1000research. 7: 822 |
Demchak B, Otasek D, Pico AR, et al. (2018) The Cytoscape Automation app article collection. F1000research. 7: 800 |
Ma J, Yu MK, Fong S, et al. (2018) Using deep learning to model the hierarchical structure and function of a cell. Nature Methods |
Pratt D, Chen J, Pillich R, et al. (2017) NDEx 2.0: A Clearinghouse for Research on Cancer Pathways. Cancer Research. 77: e58-e61 |
Carlin DE, Demchak B, Pratt D, et al. (2017) Network propagation in the cytoscape cyberinfrastructure. Plos Computational Biology. 13: e1005598 |
Fitts B, Zhang Z, Maher M, et al. (2016) dot-app: a Graphviz-Cytoscape conversion plug-in. F1000research. 5: 2543 |