Di Wu

David A. Kofke	grad student	2005	SUNY Buffalo
(Development and application of phase -space overlap measures for free -energy calculations.)

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Wu D, Kofke DA. (2005) Phase-space overlap measures. II. Design and implementation of staging methods for free-energy calculations. The Journal of Chemical Physics. 123: 084109
Wu D, Kofke DA. (2005) Phase-space overlap measures. I. Fail-safe bias detection in free energies calculated by molecular simulation. The Journal of Chemical Physics. 123: 054103
Wu D, Kofke DA. (2005) Rosenbluth-sampled nonequilibrium work method for calculation of free energies in molecular simulation. The Journal of Chemical Physics. 122: 204104
Wu D, Kofke DA. (2004) Asymmetric bias in free-energy perturbation measurements using two Hamiltonian-based models. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 066702
Wu D, Kofke DA. (2004) Model for small-sample bias of free-energy calculations applied to Gaussian-distributed nonequilibrium work measurements. The Journal of Chemical Physics. 121: 8742-7
Lu N, Wu D, Woolf TB, et al. (2004) Using overlap and funnel sampling to obtain accurate free energies from nonequilibrium work measurements. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 057702