Andrew D. Fernandes, Ph.D.
Affiliations: | North Carolina State University, Raleigh, NC |
Area:
Computational biology, molecular evolutionGoogle:
"Andrew Fernandes"Parents
Sign in to add mentorWilliam R. Atchley | grad student | 2006 | NCSU | |
(Quantifying phylogenetic conservation in protein molecular evolution.) |
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Publications
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Fernandes AD, Kleinstiver BP, Edgell DR, et al. (2010) Estimating the evidence of selection and the reliability of inference in unigenic evolution. Algorithms For Molecular Biology : Amb. 5: 35 |
Gloor GB, Hummelen R, Macklaim JM, et al. (2010) Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products. Plos One. 5: e15406 |
Dickson RJ, Wahl LM, Fernandes AD, et al. (2010) Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation. Plos One. 5: e11082 |
Kleinstiver BP, Fernandes AD, Gloor GB, et al. (2010) A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI. Nucleic Acids Research. 38: 2411-27 |
Fernandes AD, Atchley WR. (2008) Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative. Bioinformatics (Oxford, England). 24: 2177-83 |
Fernandes AD, Atchley WR. (2008) Biochemical and functional evidence of p53 homology is inconsistent with molecular phylogenetics for distant sequences. Journal of Molecular Evolution. 67: 51-67 |
Fernandes AD, Atchley WR. (2006) Gaussian quadrature formulae for arbitrary positive measures. Evolutionary Bioinformatics Online. 2: 251-9 |
Atchley WR, Fernandes AD. (2005) Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network. Proceedings of the National Academy of Sciences of the United States of America. 102: 6401-6 |
Atchley WR, Zhao J, Fernandes AD, et al. (2005) Solving the protein sequence metric problem. Proceedings of the National Academy of Sciences of the United States of America. 102: 6395-400 |