Johan A. Grahnen, Ph.D.
Affiliations: | Molecular Biology | University of Wyoming, Laramie, WY, United States |
Area:
molecular evolution, comparative genomics, bioinformaticsGoogle:
"Johan Grahnen"Parents
Sign in to add mentor| David A. Liberles | grad student | 2012 | University of Wyoming | |
| (Modeling the influence of protein structure, function and biophysics on the evolution of protein-coding sequences at the genic and genomic levels.) | ||||
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Publications
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| Liberles DA, Teichmann SA, Bahar I, et al. (2012) The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85 |
| Grahnen JA, Liberles DA. (2012) CASS: Protein sequence simulation with explicit genotype-phenotype mapping Trends in Evolutionary Biology. 4: 47-49 |
| Siltberg-Liberles J, Grahnen JA, Liberles DA. (2011) The evolution of protein structures and structural ensembles under functional constraint. Genes. 2: 748-62 |
| Grahnen JA, Nandakumar P, Kubelka J, et al. (2011) Biophysical and structural considerations for protein sequence evolution. Bmc Evolutionary Biology. 11: 361 |
| Konrad A, Teufel AI, Grahnen JA, et al. (2011) Toward a general model for the evolutionary dynamics of gene duplicates. Genome Biology and Evolution. 3: 1197-209 |
| Grahnen JA, Kubelka J, Liberles DA. (2011) Fast side chain replacement in proteins using a coarse-grained approach for evaluating the effects of mutation during evolution. Journal of Molecular Evolution. 73: 23-33 |
| Liberles DA, Tisdell MD, Grahnen JA. (2011) Binding constraints on the evolution of enzymes and signalling proteins: the important role of negative pleiotropy. Proceedings. Biological Sciences / the Royal Society. 278: 1930-5 |
| Grahnen J, Kubelka J. (2011) DFT-Based Simulations of Ir Amide I’ Spectra for a Small Protein in Solution Biophysical Journal. 100: 314a |
| Grahnen JA, Amunson KE, Kubelka J. (2010) DFT-based simulations of IR amide I' spectra for a small protein in solution. Comparison of explicit and empirical solvent models. The Journal of Physical Chemistry. B. 114: 13011-20 |
| Parchman TL, Geist KS, Grahnen JA, et al. (2010) Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. Bmc Genomics. 11: 180 |