Colin N. Dewey, Ph.D.
Affiliations: | 2006 | University of California, Berkeley, Berkeley, CA, United States |
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"Colin Dewey"Parents
Sign in to add mentor| Lior Pachter | grad student | 2006 | UC Berkeley | |
| (Whole -genome alignments and polytopes for comparative genomics.) | ||||
Children
Sign in to add trainee| Bo Li | grad student | 2008-2013 | UW Madison (Computational Biology Tree) |
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Publications
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| Toh H, Bagheri A, Dewey C, et al. (2022) A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP). Computational Biology and Chemistry. 102: 107795 |
| Liu P, Soukup AA, Bresnick EH, et al. (2020) PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments. Genome Research |
| Nolte MJ, Jing P, Dewey CN, et al. (2020) Giant Island Mice Exhibit Widespread Gene Expression Changes in Key Metabolic Organs. Genome Biology and Evolution |
| Dewey CN. (2019) Whole-Genome Alignment. Methods in Molecular Biology (Clifton, N.J.). 1910: 121-147 |
| Sanchez-Vazquez P, Dewey CN, Kitten N, et al. (2019) Genome-wide effects on transcription from ppGpp binding to its two sites on RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America |
| Hewitt KJ, Katsumura KR, Matson DR, et al. (2017) GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia. Developmental Cell. 42: 213-225.e4 |
| Bernstein MN, Doan A, Dewey CN. (2017) MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. Bioinformatics (Oxford, England) |
| Jiang P, Nelson JD, Leng N, et al. (2016) Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability. Developmental Biology |
| Liu P, Sanalkumar R, Bresnick EH, et al. (2016) Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq. Genome Research |
| Tanimura N, Miller E, Igarashi K, et al. (2015) Mechanism governing heme synthesis reveals a GATA factor/heme circuit that controls differentiation. Embo Reports |