Alexander van Oudenaarden, Ph.D.
Affiliations: | Physics | Massachusetts Institute of Technology, Cambridge, MA, United States |
Area:
BiophysicsWebsite:
http://web.mit.edu/biophysicsGoogle:
"Alexander van Oudenaarden"Bio:
https://biology.mit.edu/people/alexander_van_oudenaarden
http://web.mit.edu/physics/people/faculty/van_oudenaarden_alexander.html
Cross-listing: Physics Tree - Chemistry Tree
Parents
Sign in to add mentor| Johan E. Mooij | grad student | 1998 | Delft University of Technology (Physics Tree) | |
| (Quantum vortices and quantum interference effects in circuits of small tunnel junctions) | ||||
Children
Sign in to add trainee| Arjun Raj | grad student | (BME Tree) | |
| Murat Acar | grad student | 2007 | MIT (Physics Tree) |
| Scott A. Rifkin | post-doc | MIT | |
| Jeffrey C. Gore | post-doc | 2007-2010 | MIT (Chemistry Tree) |
| Siddharth S. Dey | post-doc | 2012-2017 | Hubrecht Institute (Cell & Gene Therapy Tree) |
BETA: Related publications
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Publications
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| Sen M, Mooijman D, Chialastri A, et al. (2021) Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development. Nature Communications. 12: 1286 |
| Mooijman D, Dey SS, Boisset JC, et al. (2016) Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction. Nature Biotechnology |
| Kind J, Pagie L, de Vries SS, et al. (2015) Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells. Cell. 163: 134-47 |
| Dey SS, Kester L, Spanjaard B, et al. (2015) Integrated genome and transcriptome sequencing of the same cell. Nature Biotechnology. 33: 285-9 |
| Steine EJ, Ehrich M, Bell GW, et al. (2011) Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer. The Journal of Clinical Investigation. 121: 1748-52 |
| Youk H, Raj A, van Oudenaarden A. (2010) Imaging single mRNA molecules in yeast. Methods in Enzymology. 470: 429-46 |
| Acar M, Pando BF, Arnold FH, et al. (2010) A general mechanism for network-dosage compensation in gene circuits. Science (New York, N.Y.). 329: 1656-60 |
| Raj A, Rifkin SA, Andersen E, et al. (2010) Variability in gene expression underlies incomplete penetrance. Nature. 463: 913-8 |
| Khalil AM, Guttman M, Huarte M, et al. (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences of the United States of America. 106: 11667-72 |
| Raj A, van Oudenaarden A. (2009) Single-molecule approaches to stochastic gene expression. Annual Review of Biophysics. 38: 255-70 |