Mark P. Simmons

Affiliations: 
Biology Colorado State University, Fort Collins, CO 
Area:
Evolution and Development Biology, Botany Biology
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"Mark Simmons"

Parents

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Charles F. Aquadro grad student 2000 Cornell (FlyTree)
 (Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, rbcL, atpB and morphology)
Jerrold I. Davis grad student 2000 Cornell (Plant Biology Tree)
 (Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, rbcL, atpB and morphology)
Jeffrey J. Doyle grad student 2000 Cornell (Cell Biology Tree)
 (Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, rbcL, atpB and morphology)
Kevin C. Nixon grad student 2000 Cornell
 (Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, rbcL, atpB and morphology)
John V. Freudenstein post-doc Colorado State (Cell Biology Tree)
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Publications

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Zuntini AR, Carruthers T, Maurin O, et al. (2024) Phylogenomics and the rise of the angiosperms. Nature
Simmons MP, Goloboff PA, Stöver BC, et al. (2023) Quantification of congruence among gene trees with polytomies using overall success of resolution for phylogenomic coalescent analyses. Cladistics : the International Journal of the Willi Hennig Society
Simmons MP, Freudenstein JV. (2021) Artifacts of Coding Amino Acids and Other Composite Characters for Phylogenetic Analysis. Cladistics : the International Journal of the Willi Hennig Society. 18: 354-365
Simmons MP, Ochoterena H, Freudenstein JV. (2021) Conflict between Amino Acid and Nucleotide Characters. Cladistics : the International Journal of the Willi Hennig Society. 18: 200-206
Simmons MP. (2021) A Fundamental Problem with Amino-Acid-Sequence Characters for Phylogenetic Analyses. Cladistics : the International Journal of the Willi Hennig Society. 16: 274-282
Simmons MP, Reeves A, Davis JI. (2021) Character-state space versus rate of evolution in phylogenetic inference. Cladistics : the International Journal of the Willi Hennig Society. 20: 191-204
Simmons MP, Springer MS, Gatesy J. (2021) Gene-tree misrooting drives conflicts in phylogenomic coalescent analyses of palaeognath birds. Molecular Phylogenetics and Evolution. 107344
Simmons MP, Gatesy J. (2021) Collapsing dubiously resolved gene-tree branches in phylogenomic coalescent analyses. Molecular Phylogenetics and Evolution. 107092
Simmons MP, Kessenich J. (2020) Divergence and support among slightly suboptimal likelihood gene trees. Cladistics : the International Journal of the Willi Hennig Society. 36: 322-340
Cámara-Leret R, Frodin DG, Adema F, et al. (2020) New Guinea has the world's richest island flora. Nature
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