AP Jason de Koning, Ph.D.
Affiliations: | BMB, Medical Genetics | University of Calgary, Calgary, Alberta, Canada |
Area:
Molecular evolution, computational genomics, evolutionary genomics, computational statisticsWebsite:
http://jasondk.orgGoogle:
"AP Jason de Koning"Children
Sign in to add traineeShamsuddin A. Bhuiyan | research assistant | (Neurotree) | |
Ivan Krukov | grad student | ||
Arnab Saha Mandal | grad student | 2014-2019 | University of Calgary Faculty of Medicine |
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Publications
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Krukov I, de Sanctis B, de Koning APJ. (2018) Wright-Fisher exact solver (WFES): scalable analysis of population genetic models without simulation or diffusion theory. Bioinformatics (Oxford, England). 33: 1416-1417 |
De Sanctis B, Krukov I, de Koning APJ. (2017) Allele Age Under Non-Classical Assumptions is Clarified by an Exact Computational Markov Chain Approach. Scientific Reports. 7: 11869 |
Castoe TA, Poole AW, de Koning AP, et al. (2015) Correction: Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake. Plos One. 10: e0136465 |
Castoe TA, De Koning APJ, Hall KT, et al. (2014) The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America (2013) 110, 51, (20645-20650) DOI: 10.1073/pnas. 1314475110) Proceedings of the National Academy of Sciences of the United States of America. 111: 3194 |
Castoe TA, de Koning AP, Hall KT, et al. (2013) The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America. 110: 20645-50 |
Vonk FJ, Casewell NR, Henkel CV, et al. (2013) The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proceedings of the National Academy of Sciences of the United States of America. 110: 20651-6 |
Shaffer HB, Minx P, Warren DE, et al. (2013) The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28 |
de Koning AP, Gu W, Castoe TA, et al. (2012) Phylogenetics, likelihood, evolution and complexity. Bioinformatics (Oxford, England). 28: 2989-90 |
Castoe TA, Streicher JW, Meik JM, et al. (2012) Thousands of microsatellite loci from the venomous coralsnake Micrurus fulvius and variability of select loci across populations and related species. Molecular Ecology Resources. 12: 1105-13 |
Liberles DA, Teichmann SA, Bahar I, et al. (2012) The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85 |