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| Diaz-Colunga J, Skwara A, Vila JCC, et al. (2024) Global epistasis and the emergence of function in microbial consortia. Cell |
| Vila JCC, Goldford J, Estrela S, et al. (2023) Metabolic similarity and the predictability of microbial community assembly. Biorxiv : the Preprint Server For Biology |
| Takano S, Vila JCC, Miyazaki R, et al. (2023) The Architecture of Metabolic Networks Constrains the Evolution of Microbial Resource Hierarchies. Molecular Biology and Evolution. 40 |
| Scott WT, Benito-Vaquerizo S, Zimmermann J, et al. (2023) A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia. Plos Computational Biology. 19: e1011363 |
| Chang CY, Bajić D, Vila JCC, et al. (2023) Emergent coexistence in multispecies microbial communities. Science (New York, N.Y.). 381: 343-348 |
| Diaz-Colunga J, Skwara A, Gowda K, et al. (2023) Global epistasis on fitness landscapes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220053 |
| Sanchez A, Bajic D, Diaz-Colunga J, et al. (2023) The community-function landscape of microbial consortia. Cell Systems. 14: 122-134 |
| Bajić D, Rebolleda-Gómez M, Muñoz MM, et al. (2021) The Macroevolutionary Consequences of Niche Construction in Microbial Metabolism. Frontiers in Microbiology. 12: 718082 |
| Estrela S, Vila JCC, Lu N, et al. (2021) Functional attractors in microbial community assembly. Cell Systems |
| Dukovski I, Bajić D, Chacón JM, et al. (2021) A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS). Nature Protocols |