John Bunge - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
Area:
Statistics

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C, Kozlov A, et al. Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. Nature Ecology & Evolution. 1: 91. PMID 28812652 DOI: 10.1038/S41559-017-0091  0.383
2016 Willis A, Bunge J, Whitman T. Improved detection of changes in species richness in high diversity microbial communities Journal of the Royal Statistical Society: Series C (Applied Statistics). 66: 963-977. DOI: 10.1111/Rssc.12206  0.417
2015 Willis A, Bunge J. Estimating diversity via frequency ratios. Biometrics. 71: 1042-9. PMID 26038228 DOI: 10.1111/Biom.12332  0.508
2015 Mahé F, Mayor J, Bunge J, Chi J, Siemensmeyer T, Stoeck T, Wahl B, Paprotka T, Filker S, Dunthorn M. Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys. The Journal of Eukaryotic Microbiology. 62: 338-45. PMID 25312509 DOI: 10.1111/Jeu.12187  0.43
2015 RoyChoudhury A, Willis A, Bunge J. Consistency of a phylogenetic tree maximum likelihood estimator Journal of Statistical Planning and Inference. 161: 73-80. DOI: 10.1016/J.Jspi.2015.01.001  0.453
2014 Bunge J, Willis A, Walsh F. Estimating the Number of Species in Microbial Diversity Studies Annual Review of Statistics and Its Application. 1: 427-445. DOI: 10.1146/ANNUREV-STATISTICS-022513-115654  0.446
2013 Allen HK, Bunge J, Foster JA, Bayles DO, Stanton TB. Estimation of viral richness from shotgun metagenomes using a frequency count approach. Microbiome. 1: 5. PMID 24451229 DOI: 10.1186/2049-2618-1-5  0.539
2012 Bunge J, Woodard L, Böhning D, Foster JA, Connolly S, Allen HK. Estimating population diversity with CatchAll. Bioinformatics (Oxford, England). 28: 1045-7. PMID 22333246 DOI: 10.1093/Bioinformatics/Bts075  0.492
2012 Foster JA, Bunge J, Gilbert JA, Moore JH. Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life. Briefings in Bioinformatics. 13: 420-9. PMID 22308073 DOI: 10.1093/Bib/Bbr080  0.343
2012 Dunthorn M, Klier J, Bunge J, Stoeck T. Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity. The Journal of Eukaryotic Microbiology. 59: 185-7. PMID 22236102 DOI: 10.1111/J.1550-7408.2011.00602.X  0.451
2012 Bunge J, Böhning D, Allen H, Foster JA. Estimating population diversity with unreliable low frequency counts. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 203-12. PMID 22174276 DOI: 10.7490/F1000Research.1089802.1  0.464
2011 Edgcomb V, Orsi W, Bunge J, Jeon S, Christen R, Leslin C, Holder M, Taylor GT, Suarez P, Varela R, Epstein S. Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness. The Isme Journal. 5: 1344-56. PMID 21390079 DOI: 10.1038/Ismej.2011.6  0.553
2011 Orsi W, Edgcomb V, Jeon S, Leslin C, Bunge J, Taylor GT, Varela R, Epstein S. Protistan microbial observatory in the Cariaco Basin, Caribbean. II. Habitat specialization. The Isme Journal. 5: 1357-73. PMID 21390077 DOI: 10.1038/Ismej.2011.7  0.47
2011 Bunge J. Estimating the number of species with CatchAll. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 121-30. PMID 21121040  0.331
2011 Massana R, Pernice M, Bunge JA, del Campo J. Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean. The Isme Journal. 5: 184-95. PMID 20631807 DOI: 10.1038/ismej.2010.104  0.388
2011 Rocchetti I, Bunge J, Böhning D. Population size estimation based upon ratios of recapture probabilities The Annals of Applied Statistics. 5: 1512-1533. DOI: 10.1214/10-Aoas436  0.48
2010 Schütte UM, Abdo Z, Foster J, Ravel J, Bunge J, Solheim B, Forney LJ. Bacterial diversity in a glacier foreland of the high Arctic. Molecular Ecology. 19: 54-66. PMID 20331770 DOI: 10.1111/J.1365-294X.2009.04479.X  0.445
2010 Behnke A, Barger KJ, Bunge J, Stoeck T. Spatio-temporal variations in protistan communities along an O/HS gradient in the anoxic Framvaren Fjord (Norway). Fems Microbiology Ecology. 72: 89-102. PMID 20163477 DOI: 10.1111/J.1574-6941.2010.00836.X  0.678
2010 Barger K, Bunge J. Objective Bayesian estimation for the number of species Bayesian Analysis. 5: 765-785. DOI: 10.1214/10-Ba527  0.693
2009 Hong S, Bunge J, Leslin C, Jeon S, Epstein SS. Polymerase chain reaction primers miss half of rRNA microbial diversity. The Isme Journal. 3: 1365-73. PMID 19693101 DOI: 10.1038/Ismej.2009.89  0.443
2009 Brown MV, Philip GK, Bunge JA, Smith MC, Bissett A, Lauro FM, Fuhrman JA, Donachie SP. Microbial community structure in the North Pacific ocean. The Isme Journal. 3: 1374-86. PMID 19626056 DOI: 10.1038/Ismej.2009.86  0.4
2009 Bunge J, Chouvarine P, Peterson DG. CotQuest: improved algorithm and software for nonlinear regression analysis of DNA reassociation kinetics data. Analytical Biochemistry. 388: 322-30. PMID 19285476 DOI: 10.1016/J.Ab.2009.03.007  0.384
2009 Edgcomb V, Orsi W, Leslin C, Epstein SS, Bunge J, Jeon S, Yakimov MM, Behnke A, Stoeck T. Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea. Extremophiles : Life Under Extreme Conditions. 13: 151-67. PMID 19057844 DOI: 10.1007/S00792-008-0206-2  0.464
2009 Alexander E, Stock A, Breiner HW, Behnke A, Bunge J, Yakimov MM, Stoeck T. Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin. Environmental Microbiology. 11: 360-81. PMID 18826436 DOI: 10.1111/J.1462-2920.2008.01777.X  0.427
2009 Stock A, Jürgens K, Bunge J, Stoeck T. Protistan diversity in suboxic and anoxic waters of the Gotland Deep (Baltic Sea) as revealed by 18S rRNA clone libraries Aquatic Microbial Ecology. 55: 267-284. DOI: 10.3354/Ame01301  0.378
2008 Jeon S, Bunge J, Leslin C, Stoeck T, Hong S, Epstein SS. Environmental rRNA inventories miss over half of protistan diversity. Bmc Microbiology. 8: 222. PMID 19087295 DOI: 10.1186/1471-2180-8-222  0.498
2008 Bunge J, Barger K. Parametric models for estimating the number of classes. Biometrical Journal. Biometrische Zeitschrift. 50: 971-82. PMID 19067331 DOI: 10.1002/Bimj.200810452  0.71
2008 Barger K, Bunge J. Bayesian estimation of the number of species using noninformative priors. Biometrical Journal. Biometrische Zeitschrift. 50: 1064-76. PMID 19035547 DOI: 10.1002/Bimj.200810445  0.709
2007 Stoeck T, Kasper J, Bunge J, Leslin C, Ilyin V, Epstein S. Protistan diversity in the Arctic: a case of paleoclimate shaping modern biodiversity? Plos One. 2: e728. PMID 17710128 DOI: 10.1371/Journal.Pone.0000728  0.328
2006 Zuendorf A, Bunge J, Behnke A, Barger KJ, Stoeck T. Diversity estimates of microeukaryotes below the chemocline of the anoxic Mariager Fjord, Denmark. Fems Microbiology Ecology. 58: 476-91. PMID 17117990 DOI: 10.1111/J.1574-6941.2006.00171.X  0.728
2006 Jeon SO, Bunge J, Stoeck T, Barger KJ, Hong SH, Epstein SS. Synthetic statistical approach reveals a high degree of richness of microbial eukaryotes in an anoxic water column. Applied and Environmental Microbiology. 72: 6578-83. PMID 17021208 DOI: 10.1128/Aem.00787-06  0.753
2006 Bunge J, Epstein SS, Peterson DG. Comment on "Computational improvements reveal great bacterial diversity and high metal toxicity in soil". Science (New York, N.Y.). 313: 918; author reply 91. PMID 16917045 DOI: 10.1126/Science.1126593  0.389
2006 Behnke A, Bunge J, Barger K, Breiner HW, Alla V, Stoeck T. Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway). Applied and Environmental Microbiology. 72: 3626-36. PMID 16672511 DOI: 10.1128/Aem.72.5.3626-3636.2006  0.706
2006 Hong SH, Bunge J, Jeon SO, Epstein SS. Predicting microbial species richness. Proceedings of the National Academy of Sciences of the United States of America. 103: 117-22. PMID 16368757 DOI: 10.1073/Pnas.0507245102  0.556
2002 Chao A, Bunge J. Estimating the number of species in a stochastic abundance model. Biometrics. 58: 531-9. PMID 12229987 DOI: 10.1111/J.0006-341X.2002.00531.X  0.534
1995 Bunge J, Fitzpatrick M, Handley J. Comparison of three estimators of the number of species Journal of Applied Statistics. 22: 45-59. DOI: 10.1080/757584397  0.467
1993 Bunge J, Fitzpatrick M. Estimating the Number of Species: A Review Journal of the American Statistical Association. 88: 364-373. DOI: 10.1080/01621459.1993.10594330  0.463
1991 Bunge JA, Handley JC. Sampling to estimate the number of duplicates in a database Computational Statistics & Data Analysis. 11: 65-74. DOI: 10.1016/0167-9473(91)90053-5  0.33
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