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James J. Collins, PhD - Publications

Affiliations: 
Biological Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Systems Biology, Synthetic Biology
Website:
http://collinslab.mit.edu/
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Year Citation  Score
2023 Wong F, de la Fuente-Nunez C, Collins JJ. Leveraging artificial intelligence in the fight against infectious diseases. Science (New York, N.Y.). 381: 164-170. PMID 37440620 DOI: 10.1126/science.adh1114  0.539
2023 Valeri JA, Soenksen LR, Collins KM, Ramesh P, Cai G, Powers R, Angenent-Mari NM, Camacho DM, Wong F, Lu TK, Collins JJ. BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences. Cell Systems. 14: 525-542.e9. PMID 37348466 DOI: 10.1016/j.cels.2023.05.007  0.471
2023 Phillips EA, Silverman AD, Joneja A, Liu M, Brown C, Carlson P, Coticchia C, Shytle K, Larsen A, Goyal N, Cai V, Huang J, Hickey JE, Ryan E, Acheampong J, ... ... Collins JJ, et al. Detection of viral RNAs at ambient temperature via reporter proteins produced through the target-splinted ligation of DNA probes. Nature Biomedical Engineering. PMID 37142844 DOI: 10.1038/s41551-023-01028-y  0.647
2022 Cabera A, Edelstein HI, Glykofrydis F, Love KS, Palacios S, Tycko J, Zhang M, Lensch S, Shields CE, Livingston M, Weiss R, Zhao H, Haynes KA, Morsut L, Chen YY, ... ... Collins JJ, et al. The sound of silence: Transgene silencing in mammalian cell engineering. Cell Systems. 13: 950-973. PMID 36549273 DOI: 10.1016/j.cels.2022.11.005  0.73
2022 Sun Q, Vega NM, Cervantes B, Mancuso CP, Mao N, Taylor MN, Collins JJ, Khalil AS, Gore J, Lu TK. Enhancing nutritional niche and host defenses by modifying the gut microbiome. Molecular Systems Biology. 18: e9933. PMID 36377768 DOI: 10.15252/msb.20209933  0.575
2022 Warrier T, El Farran C, Zeng Y, Ho BSQ, Bao Q, Zheng ZH, Bi X, Ng HH, Ong DST, Chu JJH, Sanyal A, Fullwood MJ, Collins JJ, Li H, Xu J, et al. SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates. Nucleic Acids Research. PMID 35776115 DOI: 10.1093/nar/gkac531  0.387
2022 Lummertz da Rocha E, Kubaczka C, Sugden WW, Najia MA, Jing R, Markel A, LeBlanc ZC, Dos Santos Peixoto R, Falchetti M, Collins JJ, North TE, Daley GQ. CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development. Nature Cell Biology. PMID 35414020 DOI: 10.1038/s41556-022-00884-1  0.438
2021 Lobritz MA, Andrews IW, Braff D, Porter CBM, Gutierrez A, Furuta Y, Cortes LBG, Ferrante T, Bening SC, Wong F, Gruber C, Bakerlee CW, Lambert G, Walker GC, Dwyer DJ, ... Collins JJ, et al. Increased energy demand from anabolic-catabolic processes drives β-lactam antibiotic lethality. Cell Chemical Biology. PMID 34990601 DOI: 10.1016/j.chembiol.2021.12.010  0.532
2021 Zhao EM, Mao AS, de Puig H, Zhang K, Tippens ND, Tan X, Ran FA, Han I, Nguyen PQ, Chory EJ, Hua TY, Ramesh P, Thompson DB, Oh CY, Zigon ES, ... ... Collins JJ, et al. RNA-responsive elements for eukaryotic translational control. Nature Biotechnology. PMID 34711989 DOI: 10.1038/s41587-021-01068-2  0.742
2021 Cubillos-Ruiz A, Guo T, Sokolovska A, Miller PF, Collins JJ, Lu TK, Lora JM. Engineering living therapeutics with synthetic biology. Nature Reviews. Drug Discovery. PMID 34616030 DOI: 10.1038/s41573-021-00285-3  0.532
2021 Lopatkin AJ, Bening SC, Manson AL, Stokes JM, Kohanski MA, Badran AH, Earl AM, Cheney NJ, Yang JH, Collins JJ. Clinically relevant mutations in core metabolic genes confer antibiotic resistance. Science (New York, N.Y.). 371. PMID 33602825 DOI: 10.1126/science.aba0862  0.689
2020 Angenent-Mari NM, Garruss AS, Soenksen LR, Church G, Collins JJ. A deep learning approach to programmable RNA switches. Nature Communications. 11: 5057. PMID 33028812 DOI: 10.1038/s41467-020-18677-1  0.386
2020 Xing QR, El Farran CA, Gautam P, Chuah YS, Warrier T, Toh CXD, Kang NY, Sugii S, Chang YT, Xu J, Collins JJ, Daley GQ, Li H, Zhang LF, Loh YH. Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing. Science Advances. 6. PMID 32917699 DOI: 10.1126/Sciadv.Aba1190  0.585
2020 Zheng EJ, Stokes JM, Collins JJ. Eradicating Bacterial Persisters with Combinations of Strongly and Weakly Metabolism-Dependent Antibiotics. Cell Chemical Biology. PMID 32916087 DOI: 10.1016/J.Chembiol.2020.08.015  0.316
2020 Johnston CW, Badran AH, Collins JJ. Continuous bioactivity-dependent evolution of an antibiotic biosynthetic pathway. Nature Communications. 11: 4202. PMID 32826900 DOI: 10.1038/S41467-020-18018-2  0.329
2020 Xing QR, El Farran CA, Zeng YY, Yi Y, Warrier T, Gautam P, Collins JJ, Xu J, Dröge P, Koh CG, Li H, Zhang LF, Loh YH. Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility. Genome Research. PMID 32699019 DOI: 10.1101/Gr.257840.119  0.453
2020 Lopatkin AJ, Collins JJ. Predictive biology: modelling, understanding and harnessing microbial complexity. Nature Reviews. Microbiology. PMID 32472051 DOI: 10.1038/S41579-020-0372-5  0.3
2020 Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, ... ... Collins JJ, et al. A Deep Learning Approach to Antibiotic Discovery. Cell. 181: 475-483. PMID 32302574 DOI: 10.1016/j.cell.2020.04.001  0.747
2020 Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackerman Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, ... ... Collins JJ, et al. A Deep Learning Approach to Antibiotic Discovery. Cell. 180: 688-702.e13. PMID 32084340 DOI: 10.1016/J.Cell.2020.01.021  0.782
2019 Kim J, Zhou Y, Carlson PD, Teichmann M, Chaudhary S, Simmel FC, Silver PA, Collins JJ, Lucks JB, Yin P, Green AA. De novo-designed translation-repressing riboregulators for multi-input cellular logic. Nature Chemical Biology. PMID 31686032 DOI: 10.1038/S41589-019-0388-1  0.308
2019 Lopatkin AJ, Stokes JM, Zheng EJ, Yang JH, Takahashi MK, You L, Collins JJ. Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate. Nature Microbiology. PMID 31451773 DOI: 10.1038/S41564-019-0536-0  0.568
2019 Kinney MA, Vo LT, Frame JM, Barragan J, Conway AJ, Li S, Wong KK, Collins JJ, Cahan P, North TE, Lauffenburger DA, Daley GQ. Author Correction: A systems biology pipeline identifies regulatory networks for stem cell engineering. Nature Biotechnology. PMID 31312048 DOI: 10.1038/S41587-019-0212-1  0.451
2019 Kinney MA, Vo LT, Frame JM, Barragan J, Conway AJ, Li S, Wong KK, Collins JJ, Cahan P, North TE, Lauffenburger DA, Daley GQ. A systems biology pipeline identifies regulatory networks for stem cell engineering. Nature Biotechnology. 37: 810-818. PMID 31267104 DOI: 10.1038/S41587-019-0159-2  0.533
2019 Yang JH, Wright SN, Hamblin M, McCloskey D, Alcantar MA, Schrübbers L, Lopatkin AJ, Satish S, Nili A, Palsson BO, Walker GC, Collins JJ. A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action. Cell. PMID 31080069 DOI: 10.1016/J.Cell.2019.04.016  0.647
2019 Balaban NQ, Helaine S, Lewis K, Ackermann M, Aldridge B, Andersson DI, Brynildsen MP, Bumann D, Camilli A, Collins JJ, Dehio C, Fortune S, Ghigo JM, Hardt WD, Harms A, et al. Publisher Correction: Definitions and guidelines for research on antibiotic persistence. Nature Reviews. Microbiology. PMID 31036919 DOI: 10.1038/S41579-019-0207-4  0.602
2019 Bashor CJ, Patel N, Choubey S, Beyzavi A, Kondev J, Collins JJ, Khalil AS. Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies. Science (New York, N.Y.). PMID 31000590 DOI: 10.1126/Science.Aau8287  0.308
2019 Balaban NQ, Helaine S, Lewis K, Ackermann M, Aldridge B, Andersson DI, Brynildsen MP, Bumann D, Camilli A, Collins JJ, Dehio C, Fortune S, Ghigo JM, Hardt WD, Harms A, et al. Definitions and guidelines for research on antibiotic persistence. Nature Reviews. Microbiology. PMID 30980069 DOI: 10.1038/S41579-019-0196-3  0.646
2019 Skamagki M, Correia C, Yeung P, Baslan T, Beck S, Zhang C, Ross CA, Dang L, Liu Z, Giunta S, Chang TP, Wang J, Ananthanarayanan A, Bohndorf M, Bosbach B, ... ... Collins JJ, et al. Author Correction: ZSCAN10 expression corrects the genomic instability of iPSCs from aged donors. Nature Cell Biology. PMID 30643186 DOI: 10.1038/S41556-018-0269-Y  0.381
2018 Nageshwaran S, Chavez A, Cher Yeo N, Guo X, Lance-Byrne A, Tung A, Collins JJ, Church GM. CRISPR Guide RNA Cloning for Mammalian Systems. Journal of Visualized Experiments : Jove. PMID 30346403 DOI: 10.3791/57998  0.442
2018 Yeo NC, Chavez A, Lance-Byrne A, Chan Y, Menn D, Milanova D, Kuo CC, Guo X, Sharma S, Tung A, Cecchi RJ, Tuttle M, Pradhan S, Lim ET, Davidsohn N, ... ... Collins JJ, et al. An enhanced CRISPR repressor for targeted mammalian gene regulation. Nature Methods. PMID 30013045 DOI: 10.1038/S41592-018-0048-5  0.479
2018 Guo X, Chavez A, Tung A, Chan Y, Kaas C, Yin Y, Cecchi R, Garnier SL, Kelsic ED, Schubert M, DiCarlo JE, Collins JJ, Church GM. High-throughput creation and functional profiling of DNA sequence variant libraries using CRISPR-Cas9 in yeast. Nature Biotechnology. PMID 29786095 DOI: 10.1038/Nbt.4147  0.461
2018 Chavez A, Pruitt BW, Tuttle M, Shapiro RS, Cecchi RJ, Winston J, Turczyk BM, Tung M, Collins JJ, Church GM. Precise Cas9 targeting enables genomic mutation prevention. Proceedings of the National Academy of Sciences of the United States of America. PMID 29555762 DOI: 10.1073/Pnas.1718148115  0.442
2018 Bashor CJ, Collins JJ. Understanding Biological Regulation Through Synthetic Biology. Annual Review of Biophysics. PMID 29547341 DOI: 10.1146/Annurev-Biophys-070816-033903  0.333
2018 Meylan S, Andrews IW, Collins JJ. Targeting Antibiotic Tolerance, Pathogen by Pathogen. Cell. 172: 1228-1238. PMID 29522744 DOI: 10.1016/J.Cell.2018.01.037  0.312
2018 Lummertz da Rocha E, Rowe RG, Lundin V, Malleshaiah M, Jha DK, Rambo CR, Li H, North TE, Collins JJ, Daley GQ. Reconstruction of complex single-cell trajectories using CellRouter. Nature Communications. 9: 892. PMID 29497036 DOI: 10.1038/S41467-018-03214-Y  0.577
2017 Gutierrez A, Jain S, Bhargava P, Hamblin M, Lobritz MA, Collins JJ. Understanding and Sensitizing Density-Dependent Persistence to Quinolone Antibiotics. Molecular Cell. PMID 29225037 DOI: 10.1016/J.Molcel.2017.11.012  0.469
2017 Chandrasekaran S, Zhang J, Sun Z, Zhang L, Ross CA, Huang YC, Asara JM, Li H, Daley GQ, Collins JJ. Comprehensive Mapping of Pluripotent Stem Cell Metabolism Using Dynamic Genome-Scale Network Modeling. Cell Reports. 21: 2965-2977. PMID 29212039 DOI: 10.1016/J.Celrep.2017.07.048  0.531
2017 Chandrasekaran S, Zhang J, Sun Z, Zhang L, Ross CA, Huang YC, Asara JM, Li H, Daley GQ, Collins JJ. Comprehensive Mapping of Pluripotent Stem Cell Metabolism Using Dynamic Genome-Scale Network Modeling. Cell Reports. 21: 2965-2977. PMID 29212039 DOI: 10.1016/J.Celrep.2017.07.048  0.531
2017 Yang JH, Bhargava P, McCloskey D, Mao N, Palsson BO, Collins JJ. Antibiotic-Induced Changes to the Host Metabolic Environment Inhibit Drug Efficacy and Alter Immune Function. Cell Host & Microbe. 22: 757-765.e3. PMID 29199098 DOI: 10.1016/J.Chom.2017.10.020  0.575
2017 Shapiro RS, Chavez A, Porter CBM, Hamblin M, Kaas CS, DiCarlo JE, Zeng G, Xu X, Revtovich AV, Kirienko NV, Wang Y, Church GM, Collins JJ. A CRISPR-Cas9-based gene drive platform for genetic interaction analysis in Candida albicans. Nature Microbiology. PMID 29062088 DOI: 10.1038/S41564-017-0043-0  0.584
2017 Yang JH, Bening SC, Collins JJ. Antibiotic efficacy-context matters. Current Opinion in Microbiology. 39: 73-80. PMID 29049930 DOI: 10.1016/J.Mib.2017.09.002  0.596
2017 Certain LK, Way JC, Pezone MJ, Collins JJ. Using Engineered Bacteria to Characterize Infection Dynamics and Antibiotic Effects In Vivo. Cell Host & Microbe. PMID 28867388 DOI: 10.1016/J.Chom.2017.08.001  0.309
2017 Skamagki M, Correia C, Yeung P, Baslan T, Beck S, Zhang C, Ross CA, Dang L, Liu Z, Giunta S, Chang TP, Wang J, Ananthanarayanan A, Bohndorf M, Bosbach B, ... ... Collins JJ, et al. ZSCAN10 expression corrects the genomic instability of iPSCs from aged donors. Nature Cell Biology. PMID 28846095 DOI: 10.1038/Ncb3598  0.421
2017 Takahashi N, Gruber CC, Yang JH, Liu X, Braff D, Yashaswini CN, Bhubhanil S, Furuta Y, Andreescu S, Collins JJ, Walker GC. Lethality of MalE-LacZ hybrid protein shares mechanistic attributes with oxidative component of antibiotic lethality. Proceedings of the National Academy of Sciences of the United States of America. PMID 28794281 DOI: 10.1073/Pnas.1707466114  0.588
2017 Yeung E, Dy AJ, Martin KB, Ng AH, Del Vecchio D, Beck JL, Collins JJ, Murray RM. Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks. Cell Systems. PMID 28734826 DOI: 10.1016/J.Cels.2017.06.001  0.325
2017 Meylan S, Porter CB, Yang JH, Belenky P, Gutierrez A, Lobritz MA, Park J, Kim SH, Moskowitz SM, Collins JJ. Carbon Sources Tune Antibiotic Susceptibility in Pseudomonas aeruginosa via Tricarboxylic Acid Cycle Control. Cell Chemical Biology. PMID 28111098 DOI: 10.1016/J.Chembiol.2016.12.015  0.584
2017 Del Vecchio D, Abdallah H, Qian Y, Collins JJ. A Blueprint for a Synthetic Genetic Feedback Controller to Reprogram Cell Fate. Cell Systems. PMID 28065574 DOI: 10.1016/J.Cels.2016.12.001  0.339
2016 Lee JW, Gyorgy A, Cameron DE, Pyenson N, Choi KR, Way JC, Silver PA, Del Vecchio D, Collins JJ. Creating Single-Copy Genetic Circuits. Molecular Cell. PMID 27425413 DOI: 10.1016/J.Molcel.2016.06.006  0.301
2016 Powers JT, Tsanov KM, Pearson DS, Roels F, Spina CS, Ebright R, Seligson M, de Soysa Y, Cahan P, Theißen J, Tu HC, Han A, Kurek KC, LaPier GS, Osborne JK, ... ... Collins JJ, et al. Multiple mechanisms disrupt the let-7 microRNA family in neuroblastoma. Nature. PMID 27383785 DOI: 10.1038/Nature18632  0.719
2016 Zhang J, Ratanasirintrawoot S, Chandrasekaran S, Wu Z, Ficarro SB, Yu C, Ross CA, Cacchiarelli D, Xia Q, Seligson M, Shinoda G, Xie W, Cahan P, Wang L, Ng SC, ... ... Collins JJ, et al. LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency. Cell Stem Cell. PMID 27320042 DOI: 10.1016/J.Stem.2016.05.009  0.566
2016 Toh CX, Chan JW, Chong ZS, Wang HF, Guo HC, Satapathy S, Ma D, Goh GY, Khattar E, Yang L, Tergaonkar V, Chang YT, Collins JJ, Daley GQ, Wee KB, et al. RNAi Reveals Phase-Specific Global Regulators of Human Somatic Cell Reprogramming. Cell Reports. 15: 2597-607. PMID 27292646 DOI: 10.1016/J.Celrep.2016.05.049  0.596
2016 Chandrasekaran S, Cokol-Cakmak M, Sahin N, Yilancioglu K, Kazan H, Collins JJ, Cokol M. Chemogenomics and orthology-based design of antibiotic combination therapies. Molecular Systems Biology. 12: 872. PMID 27222539 DOI: 10.15252/Msb.20156777  0.323
2016 Chavez A, Tuttle M, Pruitt BW, Ewen-Campen B, Chari R, Ter-Ovanesyan D, Haque SJ, Cecchi RJ, Kowal EJ, Buchthal J, Housden BE, Perrimon N, Collins JJ, Church G. Comparison of Cas9 activators in multiple species. Nature Methods. PMID 27214048 DOI: 10.1038/Nmeth.3871  0.483
2016 Braff D, Shis D, Collins JJ. Synthetic biology platform technologies for antimicrobial applications. Advanced Drug Delivery Reviews. PMID 27089812 DOI: 10.1016/J.Addr.2016.04.006  0.314
2016 Cohen NR, Ross CA, Jain S, Shapiro RS, Gutierrez A, Belenky P, Li H, Collins JJ. A role for the bacterial GATC methylome in antibiotic stress survival. Nature Genetics. PMID 26998690 DOI: 10.1038/Ng.3530  0.447
2015 Kim HJ, Li H, Collins JJ, Ingber DE. Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-on-a-chip. Proceedings of the National Academy of Sciences of the United States of America. PMID 26668389 DOI: 10.1073/Pnas.1522193112  0.419
2015 Chan CT, Lee JW, Cameron DE, Bashor CJ, Collins JJ. 'Deadman' and 'Passcode' microbial kill switches for bacterial containment. Nature Chemical Biology. PMID 26641934 DOI: 10.1038/Nchembio.1979  0.324
2015 Belenky P, Ye JD, Porter CB, Cohen NR, Lobritz MA, Ferrante T, Jain S, Korry BJ, Schwarz EG, Walker GC, Collins JJ. Bactericidal Antibiotics Induce Toxic Metabolic Perturbations that Lead to Cellular Damage. Cell Reports. 13: 968-980. PMID 26565910 DOI: 10.1016/J.Celrep.2015.09.059  0.31
2015 Slomovic S, Collins JJ. DNA sense-and-respond protein modules for mammalian cells. Nature Methods. 12: 1085-90. PMID 26389572 DOI: 10.1038/Nmeth.3585  0.313
2015 Yang BX, El Farran CA, Guo HC, Yu T, Fang HT, Wang HF, Schlesinger S, Seah YF, Goh GY, Neo SP, Li Y, Lorincz MC, Tergaonkar V, Lim TM, Chen L, ... ... Collins JJ, et al. Systematic identification of factors for provirus silencing in embryonic stem cells. Cell. 163: 230-45. PMID 26365490 DOI: 10.1016/J.Cell.2015.08.037  0.566
2015 Kiani S, Chavez A, Tuttle M, Hall RN, Chari R, Ter-Ovanesyan D, Qian J, Pruitt BW, Beal J, Vora S, Buchthal J, Kowal EJ, Ebrahimkhani MR, Collins JJ, Weiss R, et al. Cas9 gRNA engineering for genome editing, activation and repression. Nature Methods. 12: 1051-4. PMID 26344044 DOI: 10.1038/Nmeth.3580  0.472
2015 Lobritz MA, Belenky P, Porter CB, Gutierrez A, Yang JH, Schwarz EG, Dwyer DJ, Khalil AS, Collins JJ. Antibiotic efficacy is linked to bacterial cellular respiration. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100898 DOI: 10.1073/Pnas.1509743112  0.714
2015 Krom RJ, Bhargava P, Lobritz MA, Collins JJ. Engineered Phagemids for Nonlytic, Targeted Antibacterial Therapies. Nano Letters. 15: 4808-13. PMID 26044909 DOI: 10.1021/Acs.Nanolett.5B01943  0.315
2015 Chavez A, Scheiman J, Vora S, Pruitt BW, Tuttle M, P R Iyer E, Lin S, Kiani S, Guzman CD, Wiegand DJ, Ter-Ovanesyan D, Braff JL, Davidsohn N, Housden BE, Perrimon N, ... ... Collins JJ, et al. Highly efficient Cas9-mediated transcriptional programming. Nature Methods. 12: 326-8. PMID 25730490 DOI: 10.1038/Nmeth.3312  0.487
2015 Keung AJ, Joung JK, Khalil AS, Collins JJ. Chromatin regulation at the frontier of synthetic biology. Nature Reviews. Genetics. 16: 159-71. PMID 25668787 DOI: 10.1038/Nrg3900  0.313
2015 Dwyer DJ, Collins JJ, Walker GC. Unraveling the physiological complexities of antibiotic lethality. Annual Review of Pharmacology and Toxicology. 55: 313-32. PMID 25251995 DOI: 10.1146/Annurev-Pharmtox-010814-124712  0.607
2015 Kumar RM, Cahan P, Shalek AK, Satija R, DaleyKeyser AJ, Li H, Zhang J, Pardee K, Gennert D, Trombetta JJ, Ferrante TC, Regev A, Daley GQ, Collins JJ. Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells Nature. 519: 118-118. DOI: 10.1038/Nature14150  0.534
2014 Cahan P, Morris SA, Collins JJ, Daley GQ. Defining cellular identity through network biology. Cell Cycle (Georgetown, Tex.). 13: 3313-4. PMID 25485572 DOI: 10.4161/15384101.2014.972918  0.449
2014 Kumar RM, Cahan P, Shalek AK, Satija R, DaleyKeyser AJ, Li H, Zhang J, Pardee K, Gennert D, Trombetta JJ, Ferrante TC, Regev A, Daley GQ, Collins JJ. Deconstructing transcriptional heterogeneity in pluripotent stem cells. Nature. 516: 56-61. PMID 25471879 DOI: 10.1038/Nature13920  0.587
2014 Green AA, Silver PA, Collins JJ, Yin P. Toehold switches: de-novo-designed regulators of gene expression. Cell. 159: 925-39. PMID 25417166 DOI: 10.1016/J.Cell.2014.10.002  0.345
2014 Cameron DE, Collins JJ. Tunable protein degradation in bacteria. Nature Biotechnology. 32: 1276-81. PMID 25402616 DOI: 10.1038/Nbt.3053  0.311
2014 Modi SR, Collins JJ, Relman DA. Antibiotics and the gut microbiota. The Journal of Clinical Investigation. 124: 4212-8. PMID 25271726 DOI: 10.1172/Jci72333  0.583
2014 Cahan P, Li H, Morris SA, Lummertz da Rocha E, Daley GQ, Collins JJ. CellNet: network biology applied to stem cell engineering. Cell. 158: 903-15. PMID 25126793 DOI: 10.1016/J.Cell.2014.07.020  0.591
2014 Morris SA, Cahan P, Li H, Zhao AM, San Roman AK, Shivdasani RA, Collins JJ, Daley GQ. Dissecting engineered cell types and enhancing cell fate conversion via CellNet. Cell. 158: 889-902. PMID 25126792 DOI: 10.1016/J.Cell.2014.07.021  0.594
2014 Lang AH, Li H, Collins JJ, Mehta P. Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes. Plos Computational Biology. 10: e1003734. PMID 25122086 DOI: 10.1371/Journal.Pcbi.1003734  0.467
2014 Lu Y, Loh YH, Li H, Cesana M, Ficarro SB, Parikh JR, Salomonis N, Toh CX, Andreadis ST, Luckey CJ, Collins JJ, Daley GQ, Marto JA. Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells. Cell Stem Cell. 15: 92-101. PMID 24813856 DOI: 10.1016/J.Stem.2014.04.002  0.577
2014 Dwyer DJ, Belenky PA, Yang JH, MacDonald IC, Martell JD, Takahashi N, Chan CT, Lobritz MA, Braff D, Schwarz EG, Ye JD, Pati M, Vercruysse M, Ralifo PS, Allison KR, ... ... Collins JJ, et al. Antibiotics induce redox-related physiological alterations as part of their lethality. Proceedings of the National Academy of Sciences of the United States of America. 111: E2100-9. PMID 24803433 DOI: 10.1073/Pnas.1401876111  0.796
2014 Dusonchet J, Li H, Guillily M, Liu M, Stafa K, Derada Troletti C, Boon JY, Saha S, Glauser L, Mamais A, Citro A, Youmans KL, Liu L, Schneider BL, Aebischer P, ... ... Collins JJ, et al. A Parkinson's disease gene regulatory network identifies the signaling protein RGS2 as a modulator of LRRK2 activity and neuronal toxicity. Human Molecular Genetics. 23: 4887-905. PMID 24794857 DOI: 10.1093/Hmg/Ddu202  0.44
2014 Torisawa YS, Spina CS, Mammoto T, Mammoto A, Weaver JC, Tat T, Collins JJ, Ingber DE. Bone marrow-on-a-chip replicates hematopoietic niche physiology in vitro. Nature Methods. 11: 663-9. PMID 24793454 DOI: 10.1038/Nmeth.2938  0.658
2014 Mee MT, Collins JJ, Church GM, Wang HH. Syntrophic exchange in synthetic microbial communities. Proceedings of the National Academy of Sciences of the United States of America. 111: E2149-56. PMID 24778240 DOI: 10.1073/Pnas.1405641111  0.455
2014 Lu J, Li H, Hu M, Sasaki T, Baccei A, Gilbert DM, Liu JS, Collins JJ, Lerou PH. The distribution of genomic variations in human iPSCs is related to replication-timing reorganization during reprogramming. Cell Reports. 7: 70-8. PMID 24685138 DOI: 10.1016/J.Celrep.2014.03.007  0.406
2014 Way JC, Collins JJ, Keasling JD, Silver PA. Integrating biological redesign: where synthetic biology came from and where it needs to go. Cell. 157: 151-61. PMID 24679533 DOI: 10.1016/J.Cell.2014.02.039  0.309
2014 Ma H, Ng HM, Teh X, Li H, Lee YH, Chong YM, Loh YH, Collins JJ, Feng B, Yang H, Wu Q. Zfp322a Regulates mouse ES cell pluripotency and enhances reprogramming efficiency. Plos Genetics. 10: e1004038. PMID 24550733 DOI: 10.1371/Journal.Pgen.1004038  0.47
2014 Pandey SP, Winkler JA, Li H, Camacho DM, Collins JJ, Walker GC. Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria. Bmc Genomics. 15: 121. PMID 24511998 DOI: 10.1186/1471-2164-15-121  0.715
2014 Brock A, Krause S, Li H, Kowalski M, Goldberg MS, Collins JJ, Ingber DE. Silencing HoxA1 by intraductal injection of siRNA lipidoid nanoparticles prevents mammary tumor progression in mice. Science Translational Medicine. 6: 217ra2. PMID 24382894 DOI: 10.1126/Scitranslmed.3007048  0.443
2014 Jasuja R, Costello JC, Singh R, Gupta V, Spina CS, Toraldo G, Jang H, Li H, Serra C, Guo W, Chauhan P, Narula NS, Guarneri T, Ergun A, Travison TG, ... Collins JJ, et al. Combined administration of testosterone plus an ornithine decarboxylase inhibitor as a selective prostate-sparing anabolic therapy. Aging Cell. 13: 303-10. PMID 24305501 DOI: 10.1111/Acel.12174  0.755
2013 Vega NM, Allison KR, Samuels AN, Klempner MS, Collins JJ. Reply to Blair et al.: Dose-dependent effects and oxidative stress responses in antibiotic tolerance in Salmonella typhimurium. Proceedings of the National Academy of Sciences of the United States of America. 110: E4570. PMID 24422210 DOI: 10.1073/Pnas.1318744110  0.77
2013 Gazit R, Garrison BS, Rao TN, Shay T, Costello J, Ericson J, Kim F, Collins JJ, Regev A, Wagers AJ, Rossi DJ. Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells. Stem Cell Reports. 1: 266-80. PMID 24319662 DOI: 10.1016/J.Stemcr.2013.07.004  0.316
2013 Doulatov S, Vo LT, Chou SS, Kim PG, Arora N, Li H, Hadland BK, Bernstein ID, Collins JJ, Zon LI, Daley GQ. Induction of multipotential hematopoietic progenitors from human pluripotent stem cells via respecification of lineage-restricted precursors. Cell Stem Cell. 13: 459-70. PMID 24094326 DOI: 10.1016/J.Stem.2013.09.002  0.552
2013 Vega NM, Allison KR, Samuels AN, Klempner MS, Collins JJ. Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance. Proceedings of the National Academy of Sciences of the United States of America. 110: 14420-5. PMID 23946425 DOI: 10.1073/Pnas.1308085110  0.78
2013 Ergun A, Doran G, Costello JC, Paik HH, Collins JJ, Mathis D, Benoist C. Differential splicing across immune system lineages. Proceedings of the National Academy of Sciences of the United States of America. 110: 14324-9. PMID 23934048 DOI: 10.1073/Pnas.1311839110  0.595
2013 Wang B, Collins JJ, Newmark PA. Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni. Elife. 2: e00768. PMID 23908765 DOI: 10.7554/Elife.00768  0.304
2013 Kalghatgi S, Spina CS, Costello JC, Liesa M, Morones-Ramirez JR, Slomovic S, Molina A, Shirihai OS, Collins JJ. Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in Mammalian cells. Science Translational Medicine. 5: 192ra85. PMID 23825301 DOI: 10.1126/Scitranslmed.3006055  0.695
2013 Albert R, Collins JJ, Glass L. Introduction to focus issue: quantitative approaches to genetic networks. Chaos (Woodbury, N.Y.). 23: 025001. PMID 23822498 DOI: 10.1063/1.4810923  0.367
2013 Morones-Ramirez JR, Winkler JA, Spina CS, Collins JJ. Silver enhances antibiotic activity against gram-negative bacteria. Science Translational Medicine. 5: 190ra81. PMID 23785037 DOI: 10.1126/Scitranslmed.3006276  0.783
2013 Cohen NR, Lobritz MA, Collins JJ. Microbial persistence and the road to drug resistance. Cell Host & Microbe. 13: 632-42. PMID 23768488 DOI: 10.1016/J.Chom.2013.05.009  0.314
2013 Modi SR, Lee HH, Spina CS, Collins JJ. Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome. Nature. 499: 219-22. PMID 23748443 DOI: 10.1038/Nature12212  0.798
2013 Collins JJ, Wang B, Lambrus BG, Tharp ME, Iyer H, Newmark PA. Adult somatic stem cells in the human parasite Schistosoma mansoni. Nature. 494: 476-9. PMID 23426263 DOI: 10.1038/Nature11924  0.302
2013 Brynildsen MP, Winkler JA, Spina CS, MacDonald IC, Collins JJ. Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production. Nature Biotechnology. 31: 160-5. PMID 23292609 DOI: 10.1038/Nbt.2458  0.784
2012 McKinney-Freeman S, Cahan P, Li H, Lacadie SA, Huang HT, Curran M, Loewer S, Naveiras O, Kathrein KL, Konantz M, Langdon EM, Lengerke C, Zon LI, Collins JJ, Daley GQ. The transcriptional landscape of hematopoietic stem cell ontogeny. Cell Stem Cell. 11: 701-14. PMID 23122293 DOI: 10.1016/J.Stem.2012.07.018  0.578
2012 Litcofsky KD, Afeyan RB, Krom RJ, Khalil AS, Collins JJ. Iterative plug-and-play methodology for constructing and modifying synthetic gene networks. Nature Methods. 9: 1077-80. PMID 23042452 DOI: 10.1038/Nmeth.2205  0.777
2012 Fu W, Ergun A, Lu T, Hill JA, Haxhinasto S, Fassett MS, Gazit R, Adoro S, Glimcher L, Chan S, Kastner P, Rossi D, Collins JJ, Mathis D, Benoist C. A multiply redundant genetic switch 'locks in' the transcriptional signature of regulatory T cells. Nature Immunology. 13: 972-80. PMID 22961053 DOI: 10.1038/Ni.2420  0.577
2012 Khalil AS, Lu TK, Bashor CJ, Ramirez CL, Pyenson NC, Joung JK, Collins JJ. A synthetic biology framework for programming eukaryotic transcription functions. Cell. 150: 647-58. PMID 22863014 DOI: 10.1016/J.Cell.2012.05.045  0.567
2012 Kumar RM, Collins JJ. Making a noisy gene: HDACs turn up the static. Molecular Cell. 47: 151-3. PMID 22840998 DOI: 10.1016/J.Molcel.2012.07.008  0.304
2012 Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR, Kellis M, Collins JJ, Stolovitzky G. Wisdom of crowds for robust gene network inference. Nature Methods. 9: 796-804. PMID 22796662 DOI: 10.1038/Nmeth.2016  0.79
2012 Genovese G, Ergun A, Shukla SA, Campos B, Hanna J, Ghosh P, Quayle SN, Rai K, Colla S, Ying H, Wu CJ, Sarkar S, Xiao Y, Zhang J, Zhang H, ... ... Collins JJ, et al. microRNA regulatory network inference identifies miR-34a as a novel regulator of TGF-β signaling in glioblastoma. Cancer Discovery. 2: 736-49. PMID 22750848 DOI: 10.1158/2159-8290.Cd-12-0111  0.575
2012 Dwyer DJ, Camacho DM, Kohanski MA, Callura JM, Collins JJ. Antibiotic-induced bacterial cell death exhibits physiological and biochemical hallmarks of apoptosis. Molecular Cell. 46: 561-72. PMID 22633370 DOI: 10.1016/J.Molcel.2012.04.027  0.778
2012 Foti JJ, Devadoss B, Winkler JA, Collins JJ, Walker GC. Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics. Science (New York, N.Y.). 336: 315-9. PMID 22517853 DOI: 10.1126/Science.1219192  0.65
2012 Callura JM, Cantor CR, Collins JJ. Genetic switchboard for synthetic biology applications. Proceedings of the National Academy of Sciences of the United States of America. 109: 5850-5. PMID 22454498 DOI: 10.1073/Pnas.1203808109  0.791
2012 Vega NM, Allison KR, Khalil AS, Collins JJ. Signaling-mediated bacterial persister formation. Nature Chemical Biology. 8: 431-3. PMID 22426114 DOI: 10.1038/Nchembio.915  0.779
2012 Ferree A, Guillily M, Li H, Smith K, Takashima A, Squillace R, Weigele M, Collins JJ, Wolozin B. Regulation of physiologic actions of LRRK2: focus on autophagy. Neuro-Degenerative Diseases. 10: 238-41. PMID 22204929 DOI: 10.1159/000332599  0.413
2012 Lee HH, Collins JJ. Microbial environments confound antibiotic efficacy. Nature Chemical Biology. 8: 6-9. PMID 22173343 DOI: 10.1038/Nchembio.740  0.579
2012 Brock A, Li H, Krause S, Kowalski M, Collins JJ, Ingber DE. Abstract 4920: Gene network models identify targets for mammary tumor normalization Cancer Research. 72: 4920-4920. DOI: 10.1158/1538-7445.Am2012-4920  0.462
2012 Powers J, Spina C, Collins J, Daley G. Abstract 2948: The role of the RNA binding protein LIN28B in neuroblastoma Cancer Research. 72: 2948-2948. DOI: 10.1158/1538-7445.Am2012-2948  0.724
2012 Brock A, Krause S, Li H, Kowalski M, Collins J, Ingber D. Abstract P5-05-04: Intraductal delivery of RNAi-based therapeutics to gene targets identified through computational systems modeling Cancer Research. 72. DOI: 10.1158/0008-5472.Sabcs12-P5-05-04  0.422
2012 Kim K, Zhao R, Doi A, Ng K, Unternaehrer J, Cahan P, Hongguang H, Loh YH, Aryee MJ, Lensch MW, Li H, Collins JJ, Feinberg AP, Daley GQ. Erratum: Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells (Nature Biotechnology (2011) 29 (1117-1119)) Nature Biotechnology. 30. DOI: 10.1038/Nbt0112-112B  0.545
2011 Kim K, Zhao R, Doi A, Ng K, Unternaehrer J, Cahan P, Huo H, Loh YH, Aryee MJ, Lensch MW, Li H, Collins JJ, Feinberg AP, Daley GQ. Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells. Nature Biotechnology. 29: 1117-9. PMID 22119740 DOI: 10.1038/Nbt.2052  0.543
2011 Allison KR, Brynildsen MP, Collins JJ. Heterogeneous bacterial persisters and engineering approaches to eliminate them. Current Opinion in Microbiology. 14: 593-8. PMID 21937262 DOI: 10.1016/J.Mib.2011.09.002  0.763
2011 Ruder WC, Lu T, Collins JJ. Synthetic biology moving into the clinic. Science (New York, N.Y.). 333: 1248-52. PMID 21885773 DOI: 10.1126/Science.1206843  0.301
2011 Modi SR, Camacho DM, Kohanski MA, Walker GC, Collins JJ. Functional characterization of bacterial sRNAs using a network biology approach. Proceedings of the National Academy of Sciences of the United States of America. 108: 15522-7. PMID 21876160 DOI: 10.1073/Pnas.1104318108  0.729
2011 Loh YH, Yang L, Yang JC, Li H, Collins JJ, Daley GQ. Genomic approaches to deconstruct pluripotency. Annual Review of Genomics and Human Genetics. 12: 165-85. PMID 21801025 DOI: 10.1146/Annurev-Genom-082410-101506  0.569
2011 Allison KR, Brynildsen MP, Collins JJ. Metabolite-enabled eradication of bacterial persisters by aminoglycosides. Nature. 473: 216-20. PMID 21562562 DOI: 10.1038/Nature10069  0.767
2011 O'Shaughnessy EC, Palani S, Collins JJ, Sarkar CA. Tunable signal processing in synthetic MAP kinase cascades. Cell. 144: 119-31. PMID 21215374 DOI: 10.1016/J.Cell.2010.12.014  0.771
2011 Allison KR, Collins JJ. Bacteria as control engineers. Molecular Cell. 41: 4-5. PMID 21211717 DOI: 10.1016/J.Molcel.2010.12.025  0.648
2011 Brock A, Li H, Krause S, Collins JJ, Ingber DE. Abstract 4924: Gene network inference models reveal novel key mediators of mammary tumorigenesis Cancer Research. 71: 4924-4924. DOI: 10.1158/1538-7445.Am2011-4924  0.488
2010 Warren L, Manos PD, Ahfeldt T, Loh YH, Li H, Lau F, Ebina W, Mandal PK, Smith ZD, Meissner A, Daley GQ, Brack AS, Collins JJ, Cowan C, Schlaeger TM, et al. Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA. Cell Stem Cell. 7: 618-30. PMID 20888316 DOI: 10.1016/J.Stem.2010.08.012  0.566
2010 Lee HH, Molla MN, Cantor CR, Collins JJ. Bacterial charity work leads to population-wide resistance. Nature. 467: 82-5. PMID 20811456 DOI: 10.1038/Nature09354  0.539
2010 Callura JM, Dwyer DJ, Isaacs FJ, Cantor CR, Collins JJ. Tracking, tuning, and terminating microbial physiology using synthetic riboregulators. Proceedings of the National Academy of Sciences of the United States of America. 107: 15898-903. PMID 20713708 DOI: 10.1073/Pnas.1009747107  0.797
2010 Cohen SE, Lewis CA, Mooney RA, Kohanski MA, Collins JJ, Landick R, Walker GC. Roles for the transcription elongation factor NusA in both DNA repair and damage tolerance pathways in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 107: 15517-22. PMID 20696893 DOI: 10.1073/Pnas.1005203107  0.598
2010 Loh YH, Hartung O, Li H, Guo C, Sahalie JM, Manos PD, Urbach A, Heffner GC, Grskovic M, Vigneault F, Lensch MW, Park IH, Agarwal S, Church GM, Collins JJ, et al. Reprogramming of T cells from human peripheral blood. Cell Stem Cell. 7: 15-9. PMID 20621044 DOI: 10.1016/J.Stem.2010.06.004  0.608
2010 Bedau M, Church G, Rasmussen S, Caplan A, Benner S, Fussenegger M, Collins J, Deamer D. Life after the synthetic cell. Nature. 465: 422-4. PMID 20495545 DOI: 10.1038/465422A  0.455
2010 Kohanski MA, Dwyer DJ, Collins JJ. How antibiotics kill bacteria: from targets to networks. Nature Reviews. Microbiology. 8: 423-35. PMID 20440275 DOI: 10.1038/Nrmicro2333  0.735
2010 Collins JJ, Endy D, Hutchison CA, Roberts RJ. Editorial-synthetic biology. Nucleic Acids Research. 38: 2513. PMID 20423911 DOI: 10.1093/Nar/Gkq221  0.317
2010 Khalil AS, Collins JJ. Synthetic biology: applications come of age. Nature Reviews. Genetics. 11: 367-79. PMID 20395970 DOI: 10.1038/Nrg2775  0.3
2010 Murphy KF, Adams RM, Wang X, Balázsi G, Collins JJ. Tuning and controlling gene expression noise in synthetic gene networks. Nucleic Acids Research. 38: 2712-26. PMID 20211838 DOI: 10.1093/Nar/Gkq091  0.567
2010 Kohanski MA, DePristo MA, Collins JJ. Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis. Molecular Cell. 37: 311-20. PMID 20159551 DOI: 10.1016/J.Molcel.2010.01.003  0.609
2010 Wolozin B, Guillily M, Ferree A, Li H, Pyenson N, Smith K, Saha S, Ebata A, Gabel CV, Collins JJ. C. elegans models of Alzheimer's disease and Parkinson's disease: Systems biology identifies an interaction between tau and LRRK2 Alzheimers & Dementia. 6. DOI: 10.1016/J.Jalz.2010.05.232  0.374
2009 Lu TK, Khalil AS, Collins JJ. Next-generation synthetic gene networks. Nature Biotechnology. 27: 1139-50. PMID 20010597 DOI: 10.1038/Nbt.1591  0.575
2009 Davies BW, Kohanski MA, Simmons LA, Winkler JA, Collins JJ, Walker GC. Hydroxyurea induces hydroxyl radical-mediated cell death in Escherichia coli. Molecular Cell. 36: 845-60. PMID 20005847 DOI: 10.1016/J.Molcel.2009.11.024  0.748
2009 Dwyer DJ, Kohanski MA, Collins JJ. Role of reactive oxygen species in antibiotic action and resistance. Current Opinion in Microbiology. 12: 482-9. PMID 19647477 DOI: 10.1016/J.Mib.2009.06.018  0.724
2009 Friedland AE, Lu TK, Wang X, Shi D, Church G, Collins JJ. Synthetic gene networks that count. Science (New York, N.Y.). 324: 1199-202. PMID 19478183 DOI: 10.1126/Science.1172005  0.786
2009 Brynildsen MP, Collins JJ. Systems biology makes it personal. Molecular Cell. 34: 137-8. PMID 19394290 DOI: 10.1016/J.Molcel.2009.04.004  0.639
2009 Ellis T, Wang X, Collins JJ. Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nature Biotechnology. 27: 465-71. PMID 19377462 DOI: 10.1038/Nbt.1536  0.342
2009 Camacho DM, Collins JJ. Systems biology strikes gold. Cell. 137: 24-6. PMID 19345182 DOI: 10.1016/J.Cell.2009.03.032  0.313
2009 Lu TK, Collins JJ. Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy. Proceedings of the National Academy of Sciences of the United States of America. 106: 4629-34. PMID 19255432 DOI: 10.1073/Pnas.0800442106  0.592
2009 Schembri F, Sridhar S, Perdomo C, Gustafson AM, Zhang X, Ergun A, Lu J, Liu G, Zhang X, Bowers J, Vaziri C, Ott K, Sensinger K, Collins JJ, Brody JS, et al. MicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium. Proceedings of the National Academy of Sciences of the United States of America. 106: 2319-24. PMID 19168627 DOI: 10.1073/Pnas.0806383106  0.552
2009 Lorenz DR, Cantor CR, Collins JJ. A network biology approach to aging in yeast. Proceedings of the National Academy of Sciences of the United States of America. 106: 1145-50. PMID 19164565 DOI: 10.1073/Pnas.0812551106  0.718
2009 McKinney-Freeman S, Li H, Curran M, Loewer S, Spina C, Naveiras O, Collins JJ, Daley GQ. A Systems Biology Approach to Study the Acquisition of Adult Repopulating Potential During Hematopoietic Stem Cell Ontogeny. Blood. 114: 1479-1479. DOI: 10.1182/Blood.V114.22.1479.1479  0.756
2009 Wang X, Ellis T, Collins JJ. Diversity-Based Design of Synthetic Gene Networks with Desired Functions Biophysical Journal. 96: 7a. DOI: 10.1016/J.Bpj.2008.12.930  0.337
2008 Dwyer DJ, Kohanski MA, Collins JJ. Networking opportunities for bacteria. Cell. 135: 1153-6. PMID 19109881 DOI: 10.1016/J.Cell.2008.12.016  0.724
2008 Kohanski MA, Dwyer DJ, Wierzbowski J, Cottarel G, Collins JJ. Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death. Cell. 135: 679-90. PMID 19013277 DOI: 10.1016/J.Cell.2008.09.038  0.724
2008 Kohanski MA, Collins JJ. Rewiring bacteria, two components at a time. Cell. 133: 947-8. PMID 18555769 DOI: 10.1016/J.Cell.2008.05.035  0.583
2008 Ellis T, Wang X, Collins JJ. Gene regulation: hacking the network on a sugar high. Molecular Cell. 30: 1-2. PMID 18406319 DOI: 10.1016/J.Molcel.2008.03.005  0.348
2007 Guido NJ, Lee P, Wang X, Elston TC, Collins JJ. A pathway and genetic factors contributing to elevated gene expression noise in stationary phase. Biophysical Journal. 93: L55-7. PMID 17890398 DOI: 10.1529/Biophysj.107.118687  0.767
2007 Kohanski MA, Dwyer DJ, Hayete B, Lawrence CA, Collins JJ. A common mechanism of cellular death induced by bactericidal antibiotics. Cell. 130: 797-810. PMID 17803904 DOI: 10.1016/J.Cell.2007.06.049  0.781
2007 Deans TL, Cantor CR, Collins JJ. A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells. Cell. 130: 363-72. PMID 17662949 DOI: 10.1016/J.Cell.2007.05.045  0.74
2007 Murphy KF, Balázsi G, Collins JJ. Combinatorial promoter design for engineering noisy gene expression. Proceedings of the National Academy of Sciences of the United States of America. 104: 12726-31. PMID 17652177 DOI: 10.1073/Pnas.0608451104  0.566
2007 Lu TK, Collins JJ. Dispersing biofilms with engineered enzymatic bacteriophage. Proceedings of the National Academy of Sciences of the United States of America. 104: 11197-202. PMID 17592147 DOI: 10.1073/Pnas.0704624104  0.557
2007 Dwyer DJ, Kohanski MA, Hayete B, Collins JJ. Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli. Molecular Systems Biology. 3: 91. PMID 17353933 DOI: 10.1038/Msb4100135  0.775
2007 Ergün A, Lawrence CA, Kohanski MA, Brennan TA, Collins JJ. A network biology approach to prostate cancer. Molecular Systems Biology. 3: 82. PMID 17299418 DOI: 10.1038/Msb4100125  0.715
2007 Hayete B, Gardner TS, Collins JJ. Size matters: network inference tackles the genome scale. Molecular Systems Biology. 3: 77. PMID 17299414 DOI: 10.1038/Msb4100118  0.796
2007 Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. Plos Biology. 5: e8. PMID 17214507 DOI: 10.1371/Journal.Pbio.0050008  0.781
2006 Blake WJ, Balázsi G, Kohanski MA, Isaacs FJ, Murphy KF, Kuang Y, Cantor CR, Walt DR, Collins JJ. Phenotypic consequences of promoter-mediated transcriptional noise. Molecular Cell. 24: 853-65. PMID 17189188 DOI: 10.1016/J.Molcel.2006.11.003  0.791
2006 Baker D, Church G, Collins J, Endy D, Jacobson J, Keasling J, Modrich P, Smolke C, Weiss R. Engineering life: Building a FAB for biology Scientific American. 294: 44-51. PMID 16711359 DOI: 10.1038/Scientificamerican0606-44  0.41
2006 Isaacs FJ, Dwyer DJ, Collins JJ. RNA synthetic biology. Nature Biotechnology. 24: 545-54. PMID 16680139 DOI: 10.1038/Nbt1208  0.741
2006 Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR, Elston TC, Collins JJ. A bottom-up approach to gene regulation. Nature. 439: 856-60. PMID 16482159 DOI: 10.1038/Nature04473  0.786
2006 Priplata AA, Patritti BL, Niemi JB, Hughes R, Gravelle DC, Lipsitz LA, Veves A, Stein J, Bonato P, Collins JJ. Noise-enhanced balance control in patients with diabetes and patients with stroke. Annals of Neurology. 59: 4-12. PMID 16287079 DOI: 10.1002/Ana.20670  0.742
2006 Priplata AA, Patritti BL, Rosengarten A, Meister JM, Niemi JB, Lipsitz LA, Collins JJ. Enhancing Human Balance Control by Apply Random Vibrations to the Ankle Tendons Medicine & Science in Sports & Exercise. 38: S440. DOI: 10.1249/00005768-200605001-02726  0.738
2005 Blake WJ, Collins JJ. And the noise played on: stochastic gene expression and HIV-1 infection. Cell. 122: 147-9. PMID 16051138 DOI: 10.1016/J.Cell.2005.07.006  0.69
2005 Kaern M, Elston TC, Blake WJ, Collins JJ. Stochasticity in gene expression: from theories to phenotypes. Nature Reviews. Genetics. 6: 451-64. PMID 15883588 DOI: 10.1038/Nrg1615  0.709
2005 Isaacs FJ, Blake WJ, Collins JJ. Molecular biology. Signal processing in single cells. Science (New York, N.Y.). 307: 1886-8. PMID 15790834 DOI: 10.1126/Science.1110797  0.79
2005 di Bernardo D, Thompson MJ, Gardner TS, Chobot SE, Eastwood EL, Wojtovich AP, Elliott SJ, Schaus SE, Collins JJ. Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks. Nature Biotechnology. 23: 377-83. PMID 15765094 DOI: 10.1038/Nbt1075  0.633
2005 Isaacs FJ, Collins JJ. Plug-and-play with RNA. Nature Biotechnology. 23: 306-7. PMID 15765083 DOI: 10.1038/Nbt0305-306  0.604
2004 Mason J, Linsay PS, Collins JJ, Glass L. Evolving complex dynamics in electronic models of genetic networks. Chaos (Woodbury, N.Y.). 14: 707-15. PMID 15446982 DOI: 10.1063/1.1786683  0.306
2004 Isaacs FJ, Dwyer DJ, Ding C, Pervouchine DD, Cantor CR, Collins JJ. Engineered riboregulators enable post-transcriptional control of gene expression. Nature Biotechnology. 22: 841-7. PMID 15208640 DOI: 10.1038/Nbt986  0.75
2004 Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proceedings of the National Academy of Sciences of the United States of America. 101: 8414-9. PMID 15159530 DOI: 10.1073/Pnas.0402940101  0.641
2004 Di Bernardo D, Gardner TS, Collins JJ. Robust identification of large genetic networks. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 486-97. PMID 14992527  0.607
2004 Priplata AA, Niemi JB, Veves A, Lipsitz LA, Collins JJ. Vibrating Insoles Improve Balance in Diabetic Patients with Peripheral Neuropathy Medicine & Science in Sports & Exercise. 36: S6. DOI: 10.1097/00005768-200405001-00028  0.727
2004 Priplata AA, Niemi JB, Harry JD, Lipsitz LA, Collins JJ. Tactile stimulation of insoles and balance control in elderly people The Lancet. 363: 85-86. DOI: 10.1016/S0140-6736(03)15214-2  0.728
2003 Priplata AA, Niemi JB, Harry JD, Lipsitz LA, Collins JJ. Vibrating insoles and balance control in elderly people. Lancet. 362: 1123-4. PMID 14550702 DOI: 10.1016/S0140-6736(03)14470-4  0.741
2003 Kaern M, Blake WJ, Collins JJ. The engineering of gene regulatory networks. Annual Review of Biomedical Engineering. 5: 179-206. PMID 14527313 DOI: 10.1146/Annurev.Bioeng.5.040202.121553  0.71
2003 Gardner TS, di Bernardo D, Lorenz D, Collins JJ. Inferring genetic networks and identifying compound mode of action via expression profiling. Science (New York, N.Y.). 301: 102-5. PMID 12843395 DOI: 10.1126/Science.1081900  0.789
2003 Isaacs FJ, Hasty J, Cantor CR, Collins JJ. Prediction and measurement of an autoregulatory genetic module. Proceedings of the National Academy of Sciences of the United States of America. 100: 7714-9. PMID 12808135 DOI: 10.1073/Pnas.1332628100  0.686
2003 Collins JJ, Priplata AA, Gravelle DC, Niemi J, Harry J, Lipsitz LA. Noise-enhanced human sensorimotor function. Ieee Engineering in Medicine and Biology Magazine : the Quarterly Magazine of the Engineering in Medicine & Biology Society. 22: 76-83. PMID 12733463 DOI: 10.1109/Memb.2003.1195700  0.75
2003 Tegner J, Yeung MK, Hasty J, Collins JJ. Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling. Proceedings of the National Academy of Sciences of the United States of America. 100: 5944-9. PMID 12730377 DOI: 10.1073/Pnas.0933416100  0.346
2003 Blake WJ, KAErn M, Cantor CR, Collins JJ. Noise in eukaryotic gene expression. Nature. 422: 633-7. PMID 12687005 DOI: 10.1038/Nature01546  0.706
2002 Scinicariello AP, Inglis JT, Collins JJ. The effects of stochastic monopolar galvanic vestibular stimulation on human postural sway. Journal of Vestibular Research : Equilibrium & Orientation. 12: 77-85. PMID 12867666  0.76
2002 Priplata A, Niemi J, Salen M, Harry J, Lipsitz LA, Collins JJ. Noise-enhanced human balance control. Physical Review Letters. 89: 238101. PMID 12485044 DOI: 10.1103/Physrevlett.89.238101  0.749
2002 Hasty J, McMillen D, Collins JJ. Engineered gene circuits. Nature. 420: 224-30. PMID 12432407 DOI: 10.1038/Nature01257  0.365
2002 Yeung MK, Tegnér J, Collins JJ. Reverse engineering gene networks using singular value decomposition and robust regression. Proceedings of the National Academy of Sciences of the United States of America. 99: 6163-8. PMID 11983907 DOI: 10.1073/Pnas.092576199  0.313
2002 McMillen D, Kopell N, Hasty J, Collins JJ. Synchronizing genetic relaxation oscillators by intercell signaling. Proceedings of the National Academy of Sciences of the United States of America. 99: 679-84. PMID 11805323 DOI: 10.1073/Pnas.022642299  0.358
2001 Hasty J, Isaacs F, Dolnik M, McMillen D, Collins JJ. Designer gene networks: Towards fundamental cellular control. Chaos (Woodbury, N.Y.). 11: 207-220. PMID 12779454 DOI: 10.1063/1.1345702  0.669
2001 Scinicariello AP, Eaton K, Inglis JT, Collins JJ. Enhancing human balance control with galvanic vestibular stimulation. Biological Cybernetics. 84: 475-80. PMID 11417059 DOI: 10.1007/Pl00007991  0.762
2001 Hasty J, McMillen D, Isaacs F, Collins JJ. Computational studies of gene regulatory networks: in numero molecular biology. Nature Reviews. Genetics. 2: 268-79. PMID 11283699 DOI: 10.1038/35066056  0.667
2001 Richardson KA, Collins JJ. Chapter 1 Electrical stimulation of the somatosensory system Handbook of Biological Physics. 4: 1-22. DOI: 10.1016/S1383-8121(01)80004-X  0.465
2000 Gardner TS, Collins JJ. Neutralizing noise in gene networks. Nature. 405: 520-1. PMID 10850696 DOI: 10.1038/35014708  0.622
2000 Hasty J, Pradines J, Dolnik M, Collins JJ. Noise-based switches and amplifiers for gene expression. Proceedings of the National Academy of Sciences of the United States of America. 97: 2075-80. PMID 10681449 DOI: 10.1073/Pnas.040411297  0.36
2000 Gardner TS, Cantor CR, Collins JJ. Construction of a genetic toggle switch in Escherichia coli. Nature. 403: 339-42. PMID 10659857 DOI: 10.1038/35002131  0.634
1999 Nozaki D, Collins JJ, Yamamoto Y. Mechanism of stochastic resonance enhancement in neuronal models driven by 1/f noise. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: 4637-44. PMID 11970325 DOI: 10.1103/Physreve.60.4637  0.63
1999 Nozaki D, Mar DJ, Grigg P, Collins JJ. Effects of Colored Noise on Stochastic Resonance in Sensory Neurons Physical Review Letters. 82: 2402-2405. DOI: 10.1103/PhysRevLett.82.2402  0.459
1999 Nozaki D, Mar DJ, Grigg P, Collins JJ. Effects of Colored Noise on Stochastic Resonance in Sensory Neurons Physical Review Letters. 82: 2402-2405. DOI: 10.1103/Physrevlett.82.2402  0.525
1999 Dolnik M, Gardner TS, Epstein IR, Collins JJ. Frequency Control of an Oscillatory Reaction by Reversible Binding of an Autocatalyst Physical Review Letters. 82: 1582-1585. DOI: 10.1103/Physrevlett.82.1582  0.576
1998 Richardson KA, Imhoff TT, Grigg P, Collins JJ. Using electrical noise to enhance the ability of humans to detect subthreshold mechanical cutaneous stimuli. Chaos (Woodbury, N.Y.). 8: 599-603. PMID 12779763 DOI: 10.1063/1.166341  0.558
1998 Gardner TS, Dolnik M, Collins JJ. A theory for controlling cell cycle dynamics using a reversibly binding inhibitor. Proceedings of the National Academy of Sciences of the United States of America. 95: 14190-5. PMID 9826676 DOI: 10.1073/Pnas.95.24.14190  0.608
1998 Golubitsky M, Stewart I, Buono P, Collins J. A modular network for legged locomotion Physica D: Nonlinear Phenomena. 115: 56-72. DOI: 10.1016/S0167-2789(97)00222-4  0.302
Low-probability matches (unlikely to be authored by this person)
2021 Robinson-McCarthy LR, Mijalis AJ, Filsinger GT, de Puig H, Donghia NM, Schaus TE, Rasmussen RA, Ferreira R, Lunshof JE, Chao G, Ter-Ovanesyan D, Dodd O, Kuru E, Sesay AM, Rainbow J, ... ... Collins JJ, et al. Anomalous COVID-19 tests hinder researchers. Science (New York, N.Y.). 371: 244-245. PMID 33446547 DOI: 10.1126/science.abf8873  0.298
2019 Stokes JM, Gutierrez A, Lopatkin AJ, Andrews IW, French S, Matic I, Brown ED, Collins JJ. A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria. Nature Methods. PMID 30858599 DOI: 10.1038/S41592-019-0333-Y  0.298
2018 Lee JW, Chan CTY, Slomovic S, Collins JJ. Next-generation biocontainment systems for engineered organisms. Nature Chemical Biology. PMID 29769737 DOI: 10.1038/S41589-018-0056-X  0.298
2008 Collins JJ, Evason K, Pickett CL, Schneider DL, Kornfeld K. The anticonvulsant ethosuximide disrupts sensory function to extend C. elegans lifespan. Plos Genetics. 4: e1000230. PMID 18949032 DOI: 10.1371/Journal.Pgen.1000230  0.298
2017 Green AA, Kim J, Ma D, Silver PA, Collins JJ, Yin P. Complex cellular logic computation using ribocomputing devices. Nature. PMID 28746304 DOI: 10.1038/Nature23271  0.296
2019 Stokes JM, Lopatkin AJ, Lobritz MA, Collins JJ. Bacterial Metabolism and Antibiotic Efficacy. Cell Metabolism. PMID 31279676 DOI: 10.1016/J.Cmet.2019.06.009  0.295
2013 Belenky P, Camacho D, Collins JJ. Fungicidal drugs induce a common oxidative-damage cellular death pathway. Cell Reports. 3: 350-8. PMID 23416050 DOI: 10.1016/J.Celrep.2012.12.021  0.295
2018 Mead BE, Ordovas-Montanes J, Braun AP, Levy LE, Bhargava P, Szucs MJ, Ammendolia DA, MacMullan MA, Yin X, Hughes TK, Wadsworth MH, Ahmad R, Rakoff-Nahoum S, Carr SA, Langer R, ... Collins JJ, et al. Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types. Bmc Biology. 16: 62. PMID 29871632 DOI: 10.1186/S12915-018-0527-2  0.295
2013 Wang B, Collins JJ, Newmark PA. Systems-Level Analysis of Stem Cells in the Larval Stage of the Human Parasitic Flatworm Schistosoma Biophysical Journal. 104: 327a. DOI: 10.1016/J.Bpj.2012.11.1818  0.294
2014 Keung AJ, Bashor CJ, Kiriakov S, Collins JJ, Khalil AS. Using targeted chromatin regulators to engineer combinatorial and spatial transcriptional regulation. Cell. 158: 110-20. PMID 24995982 DOI: 10.1016/J.Cell.2014.04.047  0.294
2015 Bhargava P, Collins JJ. Boosting bacterial metabolism to combat antibiotic resistance. Cell Metabolism. 21: 154-5. PMID 25651168 DOI: 10.1016/J.Cmet.2015.01.012  0.293
2014 Kishony R, Collins JJ. Editorial overview: Antimicrobials: grappling with the complexities of antibiotics and resistance. Current Opinion in Microbiology. 21: v-vi. PMID 25444122 DOI: 10.1016/J.Mib.2014.10.004  0.291
2018 Shapiro RS, Chavez A, Collins JJ. CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms. Nature Reviews. Microbiology. PMID 29599458 DOI: 10.1038/S41579-018-0002-7  0.29
2001 Hasty J, Collins JJ. Protein interactions. Unspinning the web. Nature. 411: 30-1. PMID 11333958 DOI: 10.1038/35075182  0.287
2016 Pardee K, Slomovic S, Nguyen PQ, Lee JW, Donghia N, Burrill D, Ferrante T, McSorley FR, Furuta Y, Vernet A, Lewandowski M, Boddy CN, Joshi NS, Collins JJ. Portable, On-Demand Biomolecular Manufacturing. Cell. 167: 248-259.e12. PMID 27662092 DOI: 10.1016/J.Cell.2016.09.013  0.286
2011 Belenky P, Collins JJ. Microbiology. Antioxidant strategies to tolerate antibiotics. Science (New York, N.Y.). 334: 915-6. PMID 22096180 DOI: 10.1126/Science.1214823  0.285
2015 Slomovic S, Pardee K, Collins JJ. Synthetic biology devices for in vitro and in vivo diagnostics. Proceedings of the National Academy of Sciences of the United States of America. 112: 14429-35. PMID 26598662 DOI: 10.1073/Pnas.1508521112  0.284
2011 Collins JJ, Donadio S. Expanding and enhancing our antibacterial arsenal. Current Opinion in Microbiology. 14: 511-2. PMID 21945218 DOI: 10.1016/J.Mib.2011.09.005  0.284
2014 Tharp ME, Collins JJ, Newmark PA. A lophotrochozoan-specific nuclear hormone receptor is required for reproductive system development in the planarian. Developmental Biology. 396: 150-7. PMID 25278423 DOI: 10.1016/J.Ydbio.2014.09.024  0.284
2002 Hasty J, Dolnik M, Rottschäfer V, Collins JJ. Synthetic gene network for entraining and amplifying cellular oscillations. Physical Review Letters. 88: 148101. PMID 11955179 DOI: 10.1103/Physrevlett.88.148101  0.282
1995 Collins JJ, Chow CC, Imhoff TT. Stochastic resonance without tuning. Nature. 376: 236-8. PMID 7617033 DOI: 10.1038/376236A0  0.282
2016 Burrill DR, Vernet A, Collins JJ, Silver PA, Way JC. Targeted erythropoietin selectively stimulates red blood cell expansion in vivo. Proceedings of the National Academy of Sciences of the United States of America. PMID 27114509 DOI: 10.1073/Pnas.1525388113  0.28
2012 Kwong LN, Costello JC, Liu H, Jiang S, Helms TL, Langsdorf AE, Jakubosky D, Genovese G, Muller FL, Jeong JH, Bender RP, Chu GC, Flaherty KT, Wargo JA, Collins JJ, et al. Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma. Nature Medicine. 18: 1503-10. PMID 22983396 DOI: 10.1038/Nm.2941  0.28
2011 Balázsi G, van Oudenaarden A, Collins JJ. Cellular decision making and biological noise: from microbes to mammals. Cell. 144: 910-25. PMID 21414483 DOI: 10.1016/J.Cell.2011.01.030  0.278
2016 Collins JN, Collins JJ. Tissue Degeneration following Loss of Schistosoma mansoni cbp1 Is Associated with Increased Stem Cell Proliferation and Parasite Death In Vivo. Plos Pathogens. 12: e1005963. PMID 27812220 DOI: 10.1371/Journal.Ppat.1005963  0.278
2014 Hicks D, Farsani GT, Laval S, Collins J, Sarkozy A, Martoni E, Shah A, Zou Y, Koch M, Bönnemann CG, Roberts M, Lochmüller H, Bushby K, Straub V. Mutations in the collagen XII gene define a new form of extracellular matrix-related myopathy. Human Molecular Genetics. 23: 2353-63. PMID 24334769 DOI: 10.1093/Hmg/Ddt637  0.278
2007 Balázsi G, Collins JJ. Taking the inventory inside single cells. Nature Chemical Biology. 3: 141-2. PMID 17301801 DOI: 10.1038/Nchembio0307-141  0.277
2011 Cogswell AA, Collins JJ, Newmark PA, Williams DL. Whole mount in situ hybridization methodology for Schistosoma mansoni. Molecular and Biochemical Parasitology. 178: 46-50. PMID 21397637 DOI: 10.1016/J.Molbiopara.2011.03.001  0.277
2014 Kotula JW, Kerns SJ, Shaket LA, Siraj L, Collins JJ, Way JC, Silver PA. Programmable bacteria detect and record an environmental signal in the mammalian gut. Proceedings of the National Academy of Sciences of the United States of America. 111: 4838-43. PMID 24639514 DOI: 10.1073/Pnas.1321321111  0.275
1994 Collins JJ, Richmond SA. Hard-wired central pattern generators for quadrupedal locomotion Biological Cybernetics. 71: 375-385. DOI: 10.1007/Bf00198915  0.275
2002 Hasty J, Collins JJ. Translating the noise. Nature Genetics. 31: 13-4. PMID 11984558 DOI: 10.1038/Ng0502-13  0.275
2018 Collins J, Danhof H, Britton RA. The role of trehalose in the global spread of epidemic Clostridium difficile. Gut Microbes. 1-6. PMID 30118389 DOI: 10.1080/19490976.2018.1491266  0.274
2016 Iyer H, Collins JJ, Newmark PA. NF-YB Regulates Spermatogonial Stem Cell Self-Renewal and Proliferation in the Planarian Schmidtea mediterranea. Plos Genetics. 12: e1006109. PMID 27304889 DOI: 10.1371/Journal.Pgen.1006109  0.274
2018 Huang A, Nguyen PQ, Stark JC, Takahashi MK, Donghia N, Ferrante T, Dy AJ, Hsu KJ, Dubner RS, Pardee K, Jewett MC, Collins JJ. BioBits™ Explorer: A modular synthetic biology education kit. Science Advances. 4: eaat5105. PMID 30083608 DOI: 10.1126/Sciadv.Aat5105  0.273
2018 Cho JH, Collins JJ, Wong WW. Universal Chimeric Antigen Receptors for Multiplexed and Logical Control of T Cell Responses. Cell. PMID 29706540 DOI: 10.1016/J.Cell.2018.03.038  0.272
2012 Kumar RM, Collins JJ. Cellular signal processing: out of one, many. Molecular Cell. 45: 143-4. PMID 22284673 DOI: 10.1016/J.Molcel.2012.01.004  0.272
2018 Takahashi MK, Tan X, Dy AJ, Braff D, Akana RT, Furuta Y, Donghia N, Ananthakrishnan A, Collins JJ. A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers. Nature Communications. 9: 3347. PMID 30131493 DOI: 10.1038/S41467-018-05864-4  0.271
2014 Cameron DE, Bashor CJ, Collins JJ. A brief history of synthetic biology. Nature Reviews. Microbiology. 12: 381-90. PMID 24686414 DOI: 10.1038/Nrmicro3239  0.27
2020 Jung JK, Alam KK, Verosloff MS, Capdevila DA, Desmau M, Clauer PR, Lee JW, Nguyen PQ, Pastén PA, Matiasek SJ, Gaillard JF, Giedroc DP, Collins JJ, Lucks JB. Cell-free biosensors for rapid detection of water contaminants. Nature Biotechnology. PMID 32632301 DOI: 10.1038/S41587-020-0571-7  0.27
2018 Collins J, Robinson C, Danhof H, Knetsch CW, van Leeuwen HC, Lawley TD, Auchtung JM, Britton RA. Dietary trehalose enhances virulence of epidemic Clostridium difficile. Nature. PMID 29310122 DOI: 10.1038/Nature25178  0.269
2018 Wendt GR, Collins JN, Pei J, Pearson MS, Bennett HM, Loukas A, Berriman M, Grishin NV, Collins JJ. Author response: Flatworm-specific transcriptional regulators promote the specification of tegumental progenitors in Schistosoma mansoni Elife. DOI: 10.7554/Elife.33221.033  0.269
2010 Collins JJ, Hou X, Romanova EV, Lambrus BG, Miller CM, Saberi A, Sweedler JV, Newmark PA. Genome-wide analyses reveal a role for peptide hormones in planarian germline development. Plos Biology. 8: e1000509. PMID 20967238 DOI: 10.1371/Journal.Pbio.1000509  0.267
2013 Hicks D, Farsani GT, Laval S, Collins J, Martoni E, Shah A, Zou Y, Koch M, Bonnemann C, Lochmuller H, Bushby K, Roberts M, Straub V. O.1 Collagen XII as a new disease gene for Bethlem-like myopathy Neuromuscular Disorders. 23: 739. DOI: 10.1016/J.Nmd.2013.06.379  0.267
2020 Gayet RV, de Puig H, English MA, Soenksen LR, Nguyen PQ, Mao AS, Angenent-Mari NM, Collins JJ. Creating CRISPR-responsive smart materials for diagnostics and programmable cargo release. Nature Protocols. PMID 32807909 DOI: 10.1038/S41596-020-0367-8  0.267
1993 Collins JJ, De Luca CJ. Open-loop and closed-loop control of posture: a random-walk analysis of center-of-pressure trajectories. Experimental Brain Research. 95: 308-18. PMID 8224055 DOI: 10.1007/Bf00229788  0.267
2016 Collins JJ, Wendt GR, Iyer H, Newmark PA. Stem cell progeny contribute to the schistosome host-parasite interface. Elife. 5. PMID 27003592 DOI: 10.7554/Elife.12473  0.267
2014 Collins JJ, Maxon M, Ellington A, Fussenegger M, Weiss R, Sauro H. Synthetic biology: How best to build a cell. Nature. 509: 155-7. PMID 24812682 DOI: 10.1038/509155A  0.266
2017 Collins JN, Collins JJ. Methods for Studying the Germline of the Human Parasite Schistosoma mansoni. Methods in Molecular Biology (Clifton, N.J.). 1463: 35-47. PMID 27734345 DOI: 10.1007/978-1-4939-4017-2_2  0.266
1999 Neiman A, Schimansky-Geier L, Moss F, Shulgin B, Collins JJ. Synchronization of noisy systems by stochastic signals. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: 284-92. PMID 11969761 DOI: 10.1103/Physreve.60.284  0.265
2016 Wang J, Collins JJ. Identification of new markers for the Schistosoma mansoni vitelline lineage. International Journal For Parasitology. PMID 27056273 DOI: 10.1016/J.Ijpara.2016.03.004  0.265
2018 Mao N, Cubillos-Ruiz A, Cameron DE, Collins JJ. Probiotic strains detect and suppress cholera in mice. Science Translational Medicine. 10. PMID 29899022 DOI: 10.1126/Scitranslmed.Aao2586  0.264
1993 Collins JJ, Stewart I. Hexapodal gaits and coupled nonlinear oscillator models Biological Cybernetics. 68: 287-298. DOI: 10.1007/Bf00201854  0.264
2015 Lambrus BG, Cochet-Escartin O, Gao J, Newmark PA, Collins EM, Collins JJ. Tryptophan hydroxylase Is Required for Eye Melanogenesis in the Planarian Schmidtea mediterranea. Plos One. 10: e0127074. PMID 26017970 DOI: 10.1371/Journal.Pone.0127074  0.263
2015 Collins JJ, Hou X, Romanova EV, Lambrus BG, Miller CM, Saberi A, Sweedler JV, Newmark PA. Correction: Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development. Plos Biology. 13: e1002234. PMID 26275013 DOI: 10.1371/Journal.Pbio.1002234  0.263
2013 Greiner HM, Horn PS, Holland K, Collins J, Hershey AD, Glauser TA. mRNA blood expression patterns in new-onset idiopathic pediatric epilepsy. Epilepsia. 54: 272-9. PMID 23167847 DOI: 10.1111/Epi.12016  0.262
1995 Christini DJ, Collins JJ. Controlling nonchaotic neuronal noise using chaos control techniques Physical Review Letters. 75: 2782-2785. DOI: 10.1103/Physrevlett.75.2782  0.262
1993 Collins JJ, Stewart IN. Coupled nonlinear oscillators and the symmetries of animal gaits Journal of Nonlinear Science. 3: 349-392. DOI: 10.1007/Bf02429870  0.261
1994 Collins JJ, Stewart I. A group-theoretic approach to rings of coupled biological oscillators Biological Cybernetics. 71: 95-103. PMID 8068779 DOI: 10.1007/Bf00197312  0.261
2019 Danielson ND, Collins J, Stothard AI, Dong QQ, Kalera K, Woodruff PJ, DeBosch BJ, Britton RA, Swarts BM. Degradation-resistant trehalose analogues block utilization of trehalose by hypervirulent Clostridioides difficile. Chemical Communications (Cambridge, England). PMID 30968891 DOI: 10.1039/C9Cc01300H  0.261
1998 Lauk M, Chow CC, Pavlik AE, Collins JJ. Human balance out of equilibrium: Nonequilibrium statistical mechanics in posture control Physical Review Letters. 80: 413-416. DOI: 10.1103/Physrevlett.80.413  0.261
2017 Gootenberg JS, Abudayyeh OO, Lee JW, Essletzbichler P, Dy AJ, Joung J, Verdine V, Donghia N, Daringer NM, Freije CA, Myhrvold C, Bhattacharyya RP, Livny J, Regev A, Koonin EV, ... ... Collins JJ, et al. Nucleic acid detection with CRISPR-Cas13a/C2c2. Science (New York, N.Y.). PMID 28408723 DOI: 10.1126/Science.Aam9321  0.26
2018 Kong W, Meldgin DR, Collins JJ, Lu T. Designing microbial consortia with defined social interactions. Nature Chemical Biology. PMID 29942078 DOI: 10.1038/S41589-018-0091-7  0.26
2011 Collins JJ, King RS, Cogswell A, Williams DL, Newmark PA. An atlas for Schistosoma mansoni organs and life-cycle stages using cell type-specific markers and confocal microscopy. Plos Neglected Tropical Diseases. 5: e1009. PMID 21408085 DOI: 10.1371/Journal.Pntd.0001009  0.26
2013 Wang B, Collins JJ, Newmark PA. Author response: Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni Elife. DOI: 10.7554/Elife.00768.014  0.259
2017 Collins J, Auchtung JM. Control of Clostridium difficile Infection by Defined Microbial Communities. Microbiology Spectrum. 5. PMID 28936948 DOI: 10.1128/Microbiolspec.Bad-0009-2016  0.259
1996 Collins JJ, Chow CC, Capela AC, Imhoff TT. Aperiodic stochastic resonance. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 54: 5575-5584. PMID 9965744 DOI: 10.1103/Physreve.54.5575  0.257
1999 Golubitsky M, Stewart I, Buono PL, Collins JJ. Symmetry in locomotor central pattern generators and animal gaits. Nature. 401: 693-5. PMID 10537106 DOI: 10.1038/44416  0.257
2016 Wendt GR, Collins JJ. Schistosomiasis as a disease of stem cells. Current Opinion in Genetics & Development. 40: 95-102. PMID 27392295 DOI: 10.1016/J.Gde.2016.06.010  0.257
1995 Collins JJ, De Luca CJ, Burrows A, Lipsitz LA. Age-related changes in open-loop and closed-loop postural control mechanisms. Experimental Brain Research. 104: 480-92. PMID 7589299 DOI: 10.1007/Bf00231982  0.257
2013 Chong T, Collins JJ, Brubacher JL, Zarkower D, Newmark PA. A sex-specific transcription factor controls male identity in a simultaneous hermaphrodite. Nature Communications. 4: 1814. PMID 23652002 DOI: 10.1038/Ncomms2811  0.256
1999 Mar DJ, Chow CC, Gerstner W, Adams RW, Collins JJ. Noise shaping in populations of coupled model neurons. Proceedings of the National Academy of Sciences of the United States of America. 96: 10450-5. PMID 10468629 DOI: 10.1073/Pnas.96.18.10450  0.256
1998 Chow CC, Imhoff TT, Collins JJ. Enhancing aperiodic stochastic resonance through noise modulation. Chaos (Woodbury, N.Y.). 8: 616-620. PMID 12779765 DOI: 10.1063/1.166343  0.255
1995 Collins JJ, De Luca CJ, Pavlik AE, Roy SH, Emley MS. The effects of spaceflight on open-loop and closed-loop postural control mechanisms: human neurovestibular studies on SLS-2. Experimental Brain Research. 107: 145-50. PMID 8751072 DOI: 10.1007/Bf00228026  0.255
2017 Mukherjee S, Mosci R, Anderson C, Snyder B, Collins J, Rudrik J, Manning SD. Frequency of Antimicrobial Resistance in Shiga Toxin-Producing Escherichia coli (STEC) and Non-Typhoidal Salmonella (NTS) Clinical Infections and Association with Epidemiological Factors Open Forum Infectious Diseases. 4. DOI: 10.1093/Ofid/Ofx163.893  0.254
2016 Dy AJ, Collins JJ. Engineering Models to Scale. Cell. 165: 516-7. PMID 27104972 DOI: 10.1016/J.Cell.2016.04.017  0.253
1995 Collins JJ, De Luca CJ. The effects of visual input on open-loop and closed-loop postural control mechanisms. Experimental Brain Research. 103: 151-63. PMID 7615030 DOI: 10.1007/Bf00241972  0.253
2003 Hsiao-Wecksler ET, Katdare K, Matson J, Liu W, Lipsitz LA, Collins JJ. Predicting the dynamic postural control response from quiet-stance behavior in elderly adults. Journal of Biomechanics. 36: 1327-33. PMID 12893041 DOI: 10.1016/S0021-9290(03)00153-2  0.253
2008 Collins J, Buckling A, Massey RC. Identification of Factors Contributing to T-Cell Toxicity of Staphylococcus aureus Clinical Isolates Journal of Clinical Microbiology. 46: 2112-2114. PMID 18417658 DOI: 10.1128/Jcm.00156-08  0.252
1997 Gailey PC, Neiman A, Collins JJ, Moss F. Stochastic resonance in ensembles of nondynamical elements: The role of internal noise Physical Review Letters. 79: 4701-4704. DOI: 10.1103/Physrevlett.79.4701  0.252
2014 Farsani GT, Hicks D, Laval S, Collins J, Sarkozy A, Martoni E, Shah A, Zou Y, Koch M, Bonnemann CG, Roberts M, Straub V, Bushby K, Lochmuller H. P77 Collagen XII; novel disease-causing candidate gene for Bethlem-like patients Neuromuscular Disorders. 24. DOI: 10.1016/S0960-8966(14)70093-8  0.251
2002 Gravelle DC, Laughton CA, Dhruv NT, Katdare KD, Niemi JB, Lipsitz LA, Collins JJ. Noise-enhanced balance control in older adults. Neuroreport. 13: 1853-6. PMID 12395078 DOI: 10.1097/00001756-200210280-00004  0.251
1994 Collins JJ, De Luca CJ. Random walking during quiet standing. Physical Review Letters. 73: 764-767. PMID 10057531 DOI: 10.1103/Physrevlett.73.764  0.251
2012 Bashor CJ, Collins JJ. Insulating gene circuits from context by RNA processing. Nature Biotechnology. 30: 1061-2. PMID 23138300 DOI: 10.1038/Nbt.2411  0.25
1999 Pradines JR, Osipov GV, Collins JJ. Coherence resonance in excitable and oscillatory systems: the essential role of slow and fast dynamics. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: 6407-10. PMID 11970555 DOI: 10.1103/Physreve.60.6407  0.25
1997 Collins JJ, Imhoff TT, Grigg P. Noise-mediated enhancements and decrements in human tactile sensation Physical Review E. 56: 923-926. DOI: 10.1103/Physreve.56.923  0.249
2018 Stark JC, Huang A, Nguyen PQ, Dubner RS, Hsu KJ, Ferrante TC, Anderson M, Kanapskyte A, Mucha Q, Packett JS, Patel P, Patel R, Qaq D, Zondor T, Burke J, ... ... Collins JJ, et al. BioBits™ Bright: A fluorescent synthetic biology education kit. Science Advances. 4: eaat5107. PMID 30083609 DOI: 10.1126/Sciadv.Aat5107  0.249
2020 de Puig H, Bosch I, Collins JJ, Gehrke L. Point-of-Care Devices to Detect Zika and Other Emerging Viruses. Annual Review of Biomedical Engineering. 22: 371-386. PMID 32501770 DOI: 10.1146/Annurev-Bioeng-060418-052240  0.249
1995 Collins JJ, De Luca CJ. Upright, correlated random walks: A statistical-biomechanics approach to the human postural control system. Chaos (Woodbury, N.Y.). 5: 57-63. PMID 12780156 DOI: 10.1063/1.166086  0.249
2010 Collins J, Bönnemann CG. Congenital muscular dystrophies: toward molecular therapeutic interventions. Current Neurology and Neuroscience Reports. 10: 83-91. PMID 20425232 DOI: 10.1007/S11910-010-0092-8  0.248
1996 Christini DJ, Collins JJ. Using chaos control and tracking to suppress a pathological nonchaotic rhythm in a cardiac model. Physical Review E. 53. PMID 9964392 DOI: 10.1103/Physreve.53.R49  0.247
2013 Collins JJ, Newmark PA. It's no fluke: the planarian as a model for understanding schistosomes. Plos Pathogens. 9: e1003396. PMID 23874195 DOI: 10.1371/Journal.Ppat.1003396  0.247
2002 Dhruv NT, Niemi JB, Harry JD, Lipsitz LA, Collins JJ. Enhancing tactile sensation in older adults with electrical noise stimulation. Neuroreport. 13: 597-600. PMID 11973453 DOI: 10.1097/00001756-200204160-00012  0.245
2018 Camacho DM, Collins KM, Powers RK, Costello JC, Collins JJ. Next-Generation Machine Learning for Biological Networks. Cell. 173: 1581-1592. PMID 29887378 DOI: 10.1016/J.Cell.2018.05.015  0.245
2019 English MA, Soenksen LR, Gayet RV, de Puig H, Angenent-Mari NM, Mao AS, Nguyen PQ, Collins JJ. Programmable CRISPR-responsive smart materials. Science (New York, N.Y.). 365: 780-785. PMID 31439791 DOI: 10.1126/Science.Aaw5122  0.245
1996 Christini DJ, Collins JJ, Linsay PS. Experimental control of high-dimensional chaos: The driven double pendulum. Physical Review E. 54: 4824-4827. PMID 9965663 DOI: 10.1103/Physreve.54.4824  0.245
2008 Evason K, Collins JJ, Huang C, Hughes S, Kornfeld K. Valproic acid extends Caenorhabditis elegans lifespan. Aging Cell. 7: 305-17. PMID 18248662 DOI: 10.1111/J.1474-9726.2008.00375.X  0.244
2019 Gao J, Yang N, Lewis FA, Yau P, Collins JJ, Sweedler JV, Newmark PA. A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host. Plos Biology. 17: e3000485. PMID 31622335 DOI: 10.1371/Journal.Pbio.3000485  0.244
2010 Collins J, Rudkin J, Recker M, Pozzi C, O'Gara JP, Massey RC. Offsetting virulence and antibiotic resistance costs by MRSA. The Isme Journal. 4: 577-84. PMID 20072161 DOI: 10.1038/Ismej.2009.151  0.243
2015 Zukosky K, Meilleur K, Traynor BJ, Dastgir J, Medne L, Devoto M, Collins J, Rooney J, Zou Y, Yang ML, Gibbs JR, Meier M, Stetefeld J, Finkel RS, Schessl J, et al. Association of a Novel ACTA1 Mutation With a Dominant Progressive Scapuloperoneal Myopathy in an Extended Family. Jama Neurology. 72: 689-98. PMID 25938801 DOI: 10.1001/Jamaneurol.2015.37  0.243
1992 Collins JJ, Stewart IN. Symmetry-breaking bifurcation: a possible mechanism for 2:1 frequency-locking in animal locomotion. Journal of Mathematical Biology. 30: 827-838. PMID 1431615 DOI: 10.1007/Bf00176458  0.243
1995 Chow CC, Collins JJ. Pinned polymer model of posture control. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 52: 907-912. PMID 9963496 DOI: 10.1103/Physreve.52.907  0.242
2015 Collins J, Auchtung JM, Schaefer L, Eaton KA, Britton RA. Humanized microbiota mice as a model of recurrent Clostridium difficile disease. Microbiome. 3: 35. PMID 26289776 DOI: 10.1186/S40168-015-0097-2  0.241
2012 Kwong LN, Costello JC, Liu H, Jiang S, Helms TL, Langsdorf AE, Jakubosky D, Genovese G, Muller FL, Jeong JH, Bender RP, Chu GC, Flaherty KT, Wargo JA, Collins JJ, et al. Erratum: Corrigendum: Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma Nature Medicine. 18: 1857-1857. DOI: 10.1038/Nm1212-1857A  0.24
2017 Giunta C, Baumann M, Fauth C, Lindert U, Abdalla EM, Brady AF, Collins J, Dastgir J, Donkervoort S, Ghali N, Johnson DS, Kariminejad A, Koch J, Kraenzlin M, Lahiri N, et al. A cohort of 17 patients with kyphoscoliotic Ehlers-Danlos syndrome caused by biallelic mutations in FKBP14: expansion of the clinical and mutational spectrum and description of the natural history. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 28617417 DOI: 10.1038/Gim.2017.70  0.24
1997 Christini DJ, Collins JJ. Real-time, adaptive, model-independent control of low-dimensional chaotic and nonchaotic dynamical systems Ieee Transactions On Circuits and Systems I: Fundamental Theory and Applications. 44: 1027-1030. DOI: 10.1109/81.633896  0.24
1993 Rosenstein MT, Collins JJ, De Luca CJ. A practical method for calculating largest Lyapunov exponents from small data sets Physica D: Nonlinear Phenomena. 65: 117-134. DOI: 10.1016/0167-2789(93)90009-P  0.239
1997 Christini DJ, Collins JJ. Control of chaos in excitable physiological systems: A geometric analysis. Chaos (Woodbury, N.Y.). 7: 544-549. PMID 12779680 DOI: 10.1063/1.166279  0.239
1995 Christini DJ, Collins JJ. Using noise and chaos control to control nonchaotic systems Physical Review E. 52: 5806-5809. DOI: 10.1103/Physreve.52.5806  0.238
2016 Collins JJ, Wendt GR, Iyer H, Newmark PA. Author response: Stem cell progeny contribute to the schistosome host-parasite interface Elife. DOI: 10.7554/Elife.12473.017  0.238
1999 Pavlik AE, Inglis JT, Lauk M, Oddsson L, Collins JJ. The effects of stochastic galvanic vestibular stimulation on human postural sway. Experimental Brain Research. 124: 273-80. PMID 9989432 DOI: 10.1007/S002210050623  0.238
1999 Collins JJ. Fishing for function in noise. Nature. 402: 241-2. PMID 10580489 DOI: 10.1038/46179  0.237
2001 Narayanan K, Collins JJ, Hamner J, Mukai S, Lipsitz LA. Predicting cerebral blood flow response to orthostatic stress from resting dynamics: effects of healthy aging. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 281: R716-22. PMID 11506984 DOI: 10.1152/Ajpregu.2001.281.3.R716  0.236
2007 Collins JJ, Bukowski JA, Weed DL, Brent RL, Klein P, Boerstoel-Streefland M, Sprafka JM, Williams AL, Holsapple MP. Evaluating emerging issues in epidemiology. Regulatory Toxicology and Pharmacology : Rtp. 48: 296-307. PMID 17543434 DOI: 10.1016/J.Yrtph.2007.04.002  0.236
1996 Heneghan C, Chow CC, Collins JJ, Imhoff TT, Lowen SB, Teich MC. Information measures quantifying aperiodic stochastic resonance. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 54: R2228-R2231. PMID 9965448 DOI: 10.1103/Physreve.54.R2228  0.235
2018 Gootenberg JS, Abudayyeh OO, Kellner MJ, Joung J, Collins JJ, Zhang F. Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6. Science (New York, N.Y.). PMID 29449508 DOI: 10.1126/Science.Aaq0179  0.235
1998 Suki B, Alencar AM, Sujeer MK, Lutchen KR, Collins JJ, Andrade JS, Ingenito EP, Zapperi S, Stanley HE. Life-support system benefits from noise [3] Nature. 393: 127-128. PMID 9603516 DOI: 10.1038/30130  0.234
1994 Collins J, Rosenstein M, De Luca C. Stochastic and chaos analyses of postural sway: A comparative approach Journal of Biomechanics. 27: 757. DOI: 10.1016/0021-9290(94)91217-3  0.234
2012 Collins J. Q&A: Circuit capacity Nature. 483: S11. PMID 22378119 DOI: 10.1038/483S11A  0.233
2013 Meilleur K, Linton M, Rutkowski A, Leach M, Jain M, Jolley C, Barton M, McGraw P, Collins J, Donkervoort S, Dastgir J, Fontana J, Sawnani H, Bonnemann C. P.1.3 Postural changes in forced vital capacity characterize congenital muscular dystrophy subtypes Neuromuscular Disorders. 23: 742. DOI: 10.1016/J.Nmd.2013.06.387  0.232
2014 Amburgey K, Bailey A, Hwang J, Tarnopolsky M, Bönnemann C, Medne L, Mathews K, Collins J, Daube J, Wellman G, Callaghan B, Vajsar J, Yoon G, Cohn R, Clarke N, et al. G.P.48 Neuromuscular Disorders. 24: 809. DOI: 10.1016/J.Nmd.2014.06.062  0.231
2023 English MA, Alcantar MA, Collins JJ. A self-propagating, barcoded transposon system for the dynamic rewiring of genomic networks. Molecular Systems Biology. e11398. PMID 36970845 DOI: 10.15252/msb.202211398  0.23
1996 Collins JJ, Imhoff TT, Grigg P. Noise-enhanced information transmission in rat SA1 cutaneous mechanoreceptors via aperiodic stochastic resonance Journal of Neurophysiology. 76: 642-645. PMID 8836253 DOI: 10.1152/Jn.1996.76.1.642  0.23
2013 Amburgey K, Bailey A, Hwang JH, Tarnopolsky MA, Bonnemann CG, Medne L, Mathews KD, Collins J, Daube JR, Wellman GP, Callaghan B, Clarke NF, Dowling JJ. Genotype-phenotype correlations in recessive RYR1-related myopathies. Orphanet Journal of Rare Diseases. 8: 117. PMID 23919265 DOI: 10.1186/1750-1172-8-117  0.23
2000 Kerrigan DC, Lee LW, Nieto TJ, Markman JD, Collins JJ, Riley PO. Kinetic alterations independent of walking speed in elderly fallers. Archives of Physical Medicine and Rehabilitation. 81: 730-5. PMID 10857514 DOI: 10.1016/S0003-9993(00)90101-1  0.23
2004 Casanova M, Cole P, Collins JJ, Conolly R, Delzell E, Heck Hd Hd, Leonard R, Lewis R, Marsh GM, Ott MG, Sorahan T, Axten CW. Re: Mortality from lymphohematopoietic malignancies among workers in formaldehyde industries. Journal of the National Cancer Institute. 96: 966-7; author reply . PMID 15199116 DOI: 10.1093/Jnci/Djh176  0.229
2013 Foley AR, Quijano-Roy S, Collins J, Straub V, McCallum M, Deconinck N, Mercuri E, Pane M, D'Amico A, Bertini E, North K, Ryan MM, Richard P, Allamand V, Hicks D, et al. Natural history of pulmonary function in collagen VI-related myopathies. Brain : a Journal of Neurology. 136: 3625-33. PMID 24271325 DOI: 10.1093/Brain/Awt284  0.229
2014 Marsh GM, Morfeld P, Collins JJ, Symons JM. Issues of methods and interpretation in the National Cancer Institute formaldehyde cohort study. Journal of Occupational Medicine and Toxicology (London, England). 9: 22. PMID 24855485 DOI: 10.1186/1745-6673-9-22  0.229
2016 Pardee K, Green AA, Takahashi MK, Braff D, Lambert G, Lee JW, Ferrante T, Ma D, Donghia N, Fan M, Daringer NM, Bosch I, Dudley DM, O'Connor DH, Gehrke L, ... Collins JJ, et al. Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components. Cell. PMID 27160350 DOI: 10.1016/J.Cell.2016.04.059  0.228
2008 Collins JJ, Huang C, Hughes S, Kornfeld K. The measurement and analysis of age-related changes in Caenorhabditis elegans. Wormbook : the Online Review of C. Elegans Biology. 1-21. PMID 18381800 DOI: 10.1895/Wormbook.1.137.1  0.228
2016 Ong TH, Romanova EV, Roberts-Galbraith RH, Yang N, Zimmerman TA, Collins JJ, Lee JE, Kelleher NL, Newmark PA, Sweedler JV. Mass Spectrometry Imaging and Identification of Peptides Associated with Cephalic Ganglia Regeneration in Schmidtea mediterranea. The Journal of Biological Chemistry. 291: 8109-20. PMID 26884331 DOI: 10.1074/Jbc.M115.709196  0.228
2002 Gravelle DC, Laughton CA, Dhruv NT, Katdare KD, Niemi JB, Lipsitz LA, Collins JJ. Effect Of Electrical Noise On Balance Control In Elderly Adults Medicine and Science in Sports and Exercise. 34. DOI: 10.1097/00005768-200205001-01236  0.228
2014 Robinson CD, Auchtung JM, Collins J, Britton RA. Epidemic Clostridium difficile strains demonstrate increased competitive fitness compared to nonepidemic isolates. Infection and Immunity. 82: 2815-25. PMID 24733099 DOI: 10.1128/Iai.01524-14  0.228
2014 Bushby KM, Collins J, Hicks D. Collagen type VI myopathies. Advances in Experimental Medicine and Biology. 802: 185-99. PMID 24443028 DOI: 10.1007/978-94-007-7893-1_12  0.228
2013 Foley AR, Quijano-Roy S, Collins J, Straub V, McCallum M, Deconinck N, Mercuri E, Pane M, D’Amico A, Bertini E, North K, Ryan MM, Auh S, Muntoni F, Bönnemann CG. P.1.2 Natural history of pulmonary function in collagen VI-related myopathies: An international study Neuromuscular Disorders. 23: 741-742. DOI: 10.1016/J.Nmd.2013.06.386  0.228
2017 Protasio AV, van Dongen S, Collins J, Quintais L, Ribeiro DM, Sessler F, Hunt M, Rinaldi G, Collins JJ, Enright AJ, Berriman M. MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni. Plos Neglected Tropical Diseases. 11: e0005559. PMID 28542189 DOI: 10.1371/Journal.Pntd.0005559  0.227
2019 Collins JJ, Moore M. A meta-analysis of epidemiologic studies of occupationally exposed styrene workers and micronuclei levels. Mutation Research. 837: 15-28. PMID 30595205 DOI: 10.1016/J.Mrgentox.2018.08.011  0.227
2008 Collins J, Tang LY, Morehart P, Myatt-Norman A, Miles L, Wong LJC, Wong B. G.P.3.08 Atypical myofiber changes of a childhood mitochondrial DNA depletion syndrome with a novel thymidine kinase 2 gene mutation Neuromuscular Disorders. 18: 754-754. DOI: 10.1016/J.Nmd.2008.06.104  0.227
2012 Collins J, Vandyke R, Fenchel M, McCallum M, Volker S, Foley AR, Muntoni F, Stehling F, Schara U, Rutkowski A, Deconinck N, Sawnani H, Bonnemann CG, Amin R. S.P.23 Percent predicted forced vital capacity is a viable outcome measure in Laminin alpha 2 – Deficient congenital muscular dystrophy Neuromuscular Disorders. 22: 893-894. DOI: 10.1016/J.Nmd.2012.06.298  0.227
2007 Swaen GM, Haidar S, Burns CJ, Bodner K, Parsons T, Collins JJ, Baase C. Mortality study update of acrylamide workers. Occupational and Environmental Medicine. 64: 396-401. PMID 17259165 DOI: 10.1136/Oem.2006.030130  0.227
1997 Christini DJ, In V, Spano ML, Ditto WL, Collins JJ. Real-time experimental control of a system in its chaotic and nonchaotic regimes Physical Review E. 56: R3749-R3752. DOI: 10.1103/Physreve.56.R3749  0.226
2019 Banton MI, Bus JS, Collins JJ, Delzell E, Gelbke HP, Kester JE, Moore MM, Waites R, Sarang SS. Evaluation of potential health effects associated with occupational and environmental exposure to styrene - an update. Journal of Toxicology and Environmental Health. Part B, Critical Reviews. 1-130. PMID 31284836 DOI: 10.1080/10937404.2019.1633718  0.226
2011 Burns CJ, Bodner KM, Jammer BL, Collins JJ, Swaen GM. The healthy worker effect in US chemical industry workers. Occupational Medicine (Oxford, England). 61: 40-4. PMID 21078828 DOI: 10.1093/Occmed/Kqq168  0.225
1974 Collins JJ, Black PH, Strosberg AD, Haber E, Bloch KJ. Transformation by simian virus 40 of spleen cells from a hyperimmune rabbit: evidence for synthesis of immunoglobulin by the transformed cells. Proceedings of the National Academy of Sciences of the United States of America. 71: 260-2. PMID 4150020 DOI: 10.1073/Pnas.71.2.260  0.225
2005 Kirman CR, Gargas ML, Marsh GM, Strother DE, Klaunig JE, Collins JJ, Deskin R. Cancer dose--response assessment for acrylonitrile based upon rodent brain tumor incidence: use of epidemiologic, mechanistic, and pharmacokinetic support for nonlinearity. Regulatory Toxicology and Pharmacology : Rtp. 43: 85-103. PMID 16099568 DOI: 10.1016/J.Yrtph.2005.06.007  0.225
2010 Burns CJ, Collins JJ, Humphry N, Bodner KM, Aylward LL, McBride D. Correlates of serum dioxin to self-reported exposure factors. Environmental Research. 110: 131-6. PMID 20018278 DOI: 10.1016/J.Envres.2009.11.003  0.225
2006 Collins JJ, Evason K, Kornfeld K. Pharmacology of delayed aging and extended lifespan of Caenorhabditis elegans. Experimental Gerontology. 41: 1032-9. PMID 16872777 DOI: 10.1016/J.Exger.2006.06.038  0.225
2020 Lee RA, Puig H, Nguyen PQ, Angenent-Mari NM, Donghia NM, McGee JP, Dvorin JD, Klapperich CM, Pollock NR, Collins JJ. Ultrasensitive CRISPR-based diagnostic for field-applicable detection of species in symptomatic and asymptomatic malaria. Proceedings of the National Academy of Sciences of the United States of America. PMID 32958655 DOI: 10.1073/Pnas.2010196117  0.224
1998 Kerrigan DC, Todd MK, Della Croce U, Lipsitz LA, Collins JJ. Biomechanical gait alterations independent of speed in the healthy elderly: evidence for specific limiting impairments. Archives of Physical Medicine and Rehabilitation. 79: 317-22. PMID 9523785 DOI: 10.1016/S0003-9993(98)90013-2  0.223
2020 Wendt G, Collins JJ. Labeling of the Schistosoma mansoni Tegument. Methods in Molecular Biology (Clifton, N.J.). 2151: 65-74. PMID 32451996 DOI: 10.1007/978-1-0716-0635-3_6  0.223
2008 Cole P, Mandel JS, Collins JJ. Acrylonitrile and cancer: a review of the epidemiology. Regulatory Toxicology and Pharmacology : Rtp. 52: 342-51. PMID 18926871 DOI: 10.1016/J.Yrtph.2008.09.004  0.223
2003 Laughton CA, Slavin M, Katdare K, Nolan L, Bean JF, Kerrigan DC, Phillips E, Lipsitz LA, Collins JJ. Aging, muscle activity, and balance control: physiologic changes associated with balance impairment. Gait & Posture. 18: 101-8. PMID 14654213 DOI: 10.1016/S0966-6362(02)00200-X  0.223
2009 Collins J, Bove KE, Dimmock D, Morehart P, Wong LJ, Wong B. Progressive myofiber loss with extensive fibro-fatty replacement in a child with mitochondrial DNA depletion syndrome and novel thymidine kinase 2 gene mutations. Neuromuscular Disorders : Nmd. 19: 784-7. PMID 19736010 DOI: 10.1016/J.Nmd.2009.08.002  0.223
2019 Wang J, Chen R, Collins JJ. Systematically improved in vitro culture conditions reveal new insights into the reproductive biology of the human parasite Schistosoma mansoni. Plos Biology. 17: e3000254. PMID 31067225 DOI: 10.1371/Journal.Pbio.3000254  0.222
1974 Strosberg AD, Collins JJ, Black PH, Malamud D, Wilbert S, Bloch KJ, Haber E. Transformation by simian virus 40 of spleen cells from a hyperimmune rabbit: demonstration of production of specific antibody to the immunizing antigen. Proceedings of the National Academy of Sciences of the United States of America. 71: 263-4. PMID 4150021 DOI: 10.1073/Pnas.71.2.263  0.222
1996 Collins JJ, Imhoff TT, Grigg P. Noise-enhanced tactile sensation. Nature. 383: 770. PMID 8893000 DOI: 10.1038/383770A0  0.222
1994 Rosenstein MT, Collins JJ. Visualizing the effects of filtering chaotic signals Computers and Graphics. 18: 587-592. DOI: 10.1016/0097-8493(94)90072-8  0.222
2009 Collins J, Hicks D, Sarcozy A, Lampe A, Norwood F, Straub V, Lochmüller H, Bushby K. EM.P.4.05 Bethlem myopathy; new insights on prevalence, phenotypic variability and genetic heterogeneity Neuromuscular Disorders. 19: 608-608. DOI: 10.1016/J.Nmd.2009.06.202  0.221
1999 Lauk M, Chow CC, Lipsitz LA, Mitchell SL, Collins JJ. Assessing muscle stiffness from quiet stance in Parkinson's disease. Muscle & Nerve. 22: 635-9. PMID 10331364 DOI: 10.1002/(Sici)1097-4598(199905)22:5<635::Aid-Mus13>3.0.Co;2-0  0.221
2001 Hasty J, Collins JJ, Wiesenfeld K, Grigg P. Wavelets of excitability in sensory neurons. Journal of Neurophysiology. 86: 2097-101. PMID 11600664 DOI: 10.1152/Jn.2001.86.4.2097  0.221
1995 Collins JJ, Chow CC, Imhoff TT. Aperiodic stochastic resonance in excitable systems. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 52: R3321-R3324. PMID 9963950 DOI: 10.1103/Physreve.52.R3321  0.22
2016 Bendixen RM, Butrum J, Jain MS, Parks R, Hodsdon B, Nichols C, Hsia M, Nelson L, Keller KC, McGuire M, Elliott JS, Linton MM, Arveson IC, Tounkara F, Vasavada R, ... ... Collins J, et al. Upper extremity outcome measures for collagen VI-related myopathy and LAMA2-related muscular dystrophy. Neuromuscular Disorders : Nmd. PMID 28087121 DOI: 10.1016/J.Nmd.2016.11.017  0.22
2004 Collins JJ, Lineker GA. A review and meta-analysis of formaldehyde exposure and leukemia. Regulatory Toxicology and Pharmacology : Rtp. 40: 81-91. PMID 15450712 DOI: 10.1016/J.Yrtph.2004.04.006  0.22
2004 Starr TB, Gause C, Youk AO, Stone R, Marsh GM, Collins JJ. A risk assessment for occupational acrylonitrile exposure using epidemiology data. Risk Analysis : An Official Publication of the Society For Risk Analysis. 24: 587-601. PMID 15209932 DOI: 10.1111/J.0272-4332.2004.00461.X  0.219
2017 Abath Neto O, Moreno CAM, Malfatti E, Donkervoort S, Böhm J, Guimarães JB, Foley AR, Mohassel P, Dastgir J, Bharucha-Goebel DX, Monges S, Lubieniecki F, Collins J, Medne L, Santi M, et al. Common and variable clinical, histological, and imaging findings of recessive RYR1-related centronuclear myopathy patients. Neuromuscular Disorders : Nmd. PMID 28818389 DOI: 10.1016/J.Nmd.2017.05.016  0.219
2019 Mcbride D, Collins J, Bender T, Bodner K, Aylward L. P.2.15 Exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin and mortality at a trichlorophenol plant in new zealand Occupational and Environmental Medicine. 76. DOI: 10.1136/Oem-2019-Epi.248  0.219
2000 Collins JJ, Riordan SG. Mortality surveillance and occupational hazards: the Solutia mortality experience 1980-94. Occupational and Environmental Medicine. 57: 710-7. PMID 10984345 DOI: 10.1136/Oem.57.10.710  0.219
2009 Neal BH, Collins JJ, Strother DE, Lamb JC. Weight-of-the-evidence review of acrylonitrile reproductive and developmental toxicity studies. Critical Reviews in Toxicology. 39: 589-612. PMID 19650719 DOI: 10.1080/10408440903052855  0.218
2018 Danhof H, Collins J, Auchtung JM, Britton RA. 29 - Metabolic Plasticity of Clostridium Difficile Ribotype 078 Strains Confers a Fitness Advantage Gastroenterology. 154. DOI: 10.1016/S0016-5085(18)30518-3  0.217
2009 Collins JJ, Bodner K, Aylward LL, Wilken M, Swaen G, Budinsky R, Rowlands C, Bodnar CM. Mortality rates among workers exposed to dioxins in the manufacture of pentachlorophenol. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 51: 1212-9. PMID 19786897 DOI: 10.1097/Jom.0B013E3181Badd4E  0.217
2011 Collins JJ, Newmark P. The planarian Schmidtea mediterranea as a free-living model for understanding and controlling flatworm parasites Developmental Biology. 356: 225-226. DOI: 10.1016/J.Ydbio.2011.05.373  0.217
2002 Stamp AT, Osipov GV, Collins JJ. Suppressing arrhythmias in cardiac models using overdrive pacing and calcium channel blockers. Chaos (Woodbury, N.Y.). 12: 931-940. PMID 12779617 DOI: 10.1063/1.1500495  0.216
2015 Meilleur KG, Jain MS, Hynan LS, Shieh CY, Kim E, Waite M, McGuire M, Fiorini C, Glanzman AM, Main M, Rose K, Duong T, Bendixen R, Linton MM, Arveson IC, ... ... Collins J, et al. Results of a two-year pilot study of clinical outcome measures in collagen VI- and laminin alpha2-related congenital muscular dystrophies. Neuromuscular Disorders : Nmd. 25: 43-54. PMID 25307854 DOI: 10.1016/J.Nmd.2014.09.010  0.216
2007 Collins JJ, Bodner K, Burns CJ, Budinsky RA, Lamparski LL, Wilken M, Martin GD, Carson ML. Body mass index and serum chlorinated dibenzo-p-dioxin and dibenzofuran levels. Chemosphere. 66: 1079-85. PMID 16919309 DOI: 10.1016/J.Chemosphere.2006.06.063  0.215
2010 Marsh GM, Youk AO, Morfeld P, Collins JJ, Symons JM. Incomplete follow-up in the National Cancer Institute's formaldehyde worker study and the impact on subsequent reanalyses and causal evaluations. Regulatory Toxicology and Pharmacology : Rtp. 58: 233-6. PMID 20553990 DOI: 10.1016/J.Yrtph.2010.06.001  0.215
2010 Aylward LL, Bodner KM, Collins JJ, Wilken M, McBride D, Burns CJ, Hays SM, Humphry N. TCDD exposure estimation for workers at a New Zealand 2,4,5-T manufacturing facility based on serum sampling data. Journal of Exposure Science & Environmental Epidemiology. 20: 417-26. PMID 19491942 DOI: 10.1038/Jes.2009.31  0.215
2008 Kirman CR, Sweeney LM, Gargas ML, Strother DE, Collins JJ, Deskin R. Derivation of noncancer reference values for acrylonitrile. Risk Analysis : An Official Publication of the Society For Risk Analysis. 28: 1375-94. PMID 18761732 DOI: 10.1111/J.1539-6924.2008.01101.X  0.215
2010 Burns CJ, Bodner KM, Jammer BL, Collins JJ, Swaen GH. Mortality surveillance of a US wide cohort of chemical industry workers. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 52: 982-7. PMID 20881628 DOI: 10.1097/Jom.0B013E3181F2Be95  0.215
1998 Polcyn AF, Lipsitz LA, Kerrigan DC, Collins JJ. Age-related changes in the initiation of gait: degradation of central mechanisms for momentum generation. Archives of Physical Medicine and Rehabilitation. 79: 1582-9. PMID 9862305 DOI: 10.1016/S0003-9993(98)90425-7  0.215
2013 Zaharieva IT, Calissano M, Scoto M, Preston M, Cirak S, Feng L, Collins J, Kole R, Guglieri M, Straub V, Bushby K, Ferlini A, Morgan JE, Muntoni F. Dystromirs as serum biomarkers for monitoring the disease severity in Duchenne muscular Dystrophy. Plos One. 8: e80263. PMID 24282529 DOI: 10.1371/Journal.Pone.0080263  0.214
2018 Collins JJ, Delzell E. A systematic review of epidemiologic studies of styrene and cancer. Critical Reviews in Toxicology. 1-28. PMID 29589466 DOI: 10.1080/10408444.2018.1445700  0.214
2012 White C, Cerese J, Groenewold J, Collins J, Dentzer S, Dellit TH, McNamara EA, Lynch JB, Ward CR, Matesic E, Rosenthal JT, Cook DJ, Thompson JE, Kollengode A, Sundt TM, et al. LEAP: Lead, Excel, Achieve, Perform: A Report on the UHC Annual Conference 2011 American Journal of Medical Quality. 27: S3-S33. DOI: 10.1177/1062860611433649  0.214
2012 Leach ME, Collins J, Bonnemann CG. S.P.28 Reported incidence of orthopedic and cardiopulmonary complications in patients with congenital muscle disease Neuromuscular Disorders. 22: 895. DOI: 10.1016/J.Nmd.2012.06.303  0.214
2014 Meilleur KM, Jain MS, Hynan LS, Shieh CY, Kim E, Waite M, McGuire M, Fiorini C, Glanzman A, Main M, Rose K, Duong T, Linton MM, Arveson IC, Nichols C, ... ... Collins J, et al. T.P.42 Neuromuscular Disorders. 24: 906-907. DOI: 10.1016/J.Nmd.2014.06.373  0.214
1998 Osipov GV, Shulgin BV, Collins JJ. Controlled movement and suppression of spiral waves in excitable media Physical Review E. 58: 6955-6958. DOI: 10.1103/Physreve.58.6955  0.213
1994 Rosenstein MT, Collins JJ, De Luca CJ. Reconstruction expansion as a geometry-based framework for choosing proper delay times Physica D: Nonlinear Phenomena. 73: 82-98. DOI: 10.1016/0167-2789(94)90226-7  0.213
2003 Bodner KM, Collins JJ, Bloemen LJ, Carson ML. Cancer risk for chemical workers exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin. Occupational and Environmental Medicine. 60: 672-5. PMID 12937189 DOI: 10.1136/Oem.60.9.672  0.213
2001 Kerrigan DC, Lee LW, Collins JJ, Riley PO, Lipsitz LA. Reduced hip extension during walking: healthy elderly and fallers versus young adults. Archives of Physical Medicine and Rehabilitation. 82: 26-30. PMID 11239282 DOI: 10.1053/Apmr.2001.18584  0.213
2012 Kirman CR, Gargas ML, Collins JJ, Rowlands JC. Screening-level risk assessment for styrene-acrylonitrile (SAN) trimer detected in soil and groundwater. Journal of Toxicology and Environmental Health. Part A. 75: 1280-97. PMID 23030654 DOI: 10.1080/15287394.2012.709441  0.213
2010 Swaen GM, van Amelsvoort L, Twisk JJ, Verstraeten E, Slootweg R, Collins JJ, Burns CJ. Low level occupational benzene exposure and hematological parameters. Chemico-Biological Interactions. 184: 94-100. PMID 20074561 DOI: 10.1016/J.Cbi.2010.01.007  0.213
2009 McBride DI, Burns CJ, Herbison GP, Humphry NF, Bodner K, Collins JJ. Mortality in employees at a New Zealand agrochemical manufacturing site. Occupational Medicine (Oxford, England). 59: 255-63. PMID 19297337 DOI: 10.1093/Occmed/Kqp030  0.213
2006 Collins JJ, Burns C, Spencer P, Bodnar CM, Calhoun T. Respiratory cancer risks among workers with glutaraldehyde exposure. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 48: 199-203. PMID 16474269 DOI: 10.1097/01.Jom.0000184865.97778.2E  0.212
1996 Cordo P, Inglis JT, Verschueren S, Collins JJ, Merfeld DM, Rosenblum S, Buckley S, Moss F. Noise in human muscle spindles. Nature. 383: 769-70. PMID 8892999 DOI: 10.1038/383769A0  0.212
2004 Swaen GM, Bloemen LJ, Twisk J, Scheffers T, Slangen JJ, Collins JJ, ten Berge WF. Mortality update of workers exposed to acrylonitrile in The Netherlands. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 46: 691-8. PMID 15247808 DOI: 10.1097/01.Jom.0000128161.17144.27  0.212
2014 Aylward LL, Collins JJ, Bodner KM, Wilken M, Bodnar CM. "Intrinsic" elimination rate and dietary intake estimates for selected indicator PCBs: toxicokinetic modeling using serial sampling data in US subjects, 2005-2010. Chemosphere. 110: 48-52. PMID 24880598 DOI: 10.1016/J.Chemosphere.2014.03.070  0.211
2013 Castillo DN, Collins J. Reflecting on the 5th National Occupational Injury Research Symposium and looking forward. Journal of Safety Research. 44: 3-5. PMID 23398698 DOI: 10.1016/J.Jsr.2012.12.001  0.211
2014 Collins JJ, Bender TJ, Bonner EM, Bodner KM, Kreft AM. Brain Cancer in Workers Employed at a Laboratory Research Facility. Plos One. 9: e113997. PMID 25493437 DOI: 10.1371/Journal.Pone.0113997  0.211
2014 Swaen G, Burns CJ, Collins JJ, Bodner KM, Dizor JF, Craun BA, Bonner EM. Slips, trips and falls at a chemical manufacturing company. Occupational Medicine (Oxford, England). 64: 120-5. PMID 24420458 DOI: 10.1093/Occmed/Kqt160  0.211
2014 Burr AR, Millay DP, Goonasekera SA, Park KH, Sargent MA, Collins J, Altamirano F, Philipson KD, Allen PD, Ma J, López JR, Molkentin JD. Na+ dysregulation coupled with Ca2+ entry through NCX1 promotes muscular dystrophy in mice. Molecular and Cellular Biology. 34: 1991-2002. PMID 24662047 DOI: 10.1128/Mcb.00339-14  0.21
2017 Nichols C, Jain MS, Meilleur KG, Wu T, Collins J, Waite MR, Dastgir J, Salman A, Donkervoort S, Duong T, Keller K, Leach ME, Lott DJ, McGuire MN, Nelson L, et al. Electrical impedance myography (EIM) in individuals with COL6 and LAMA2 congenital muscular dystrophy: a cross-sectional and two-year analysis. Muscle & Nerve. PMID 28224647 DOI: 10.1002/Mus.25629  0.21
2006 Levine NB, Collins J, Franz DN, Crone KR. Gradual formation of an operative corridor by balloon dilation for resection of subependymal giant cell astrocytomas in children with tuberous sclerosis: Specialized minimal access technique of balloon dilation Minimally Invasive Neurosurgery. 49: 317-320. PMID 17163349 DOI: 10.1055/S-2006-950391  0.21
2013 Rutter MM, Collins J, Backeljauw PF, Horn P, Taylor MD, Hu SY, Blum S, Morehart P, Sawnani H, Wong BL. P.11.15 Recombinant human insulin-like growth factor-I (IGF-I) therapy in Duchenne Muscular Dystrophy (DMD): A 6-month prospective randomized controlled trial Neuromuscular Disorders. 23: 803. DOI: 10.1016/J.Nmd.2013.06.576  0.21
2006 Collins JJ, Budinsky RA, Burns CJ, Lamparski LL, Carson ML, Martin GD, Wilken M. Serum dioxin levels in former chlorophenol workers. Journal of Exposure Science & Environmental Epidemiology. 16: 76-84. PMID 16015278 DOI: 10.1038/Sj.Jea.7500439  0.209
2018 Oates EC, Jones KJ, Donkervoort S, Charlton A, Brammah S, Smith JE, Ware JS, Yau KS, Swanson LC, Whiffin N, Peduto AJ, Bournazos A, Waddell LB, Farrar MA, Sampaio HA, ... ... Collins J, et al. Congenital titinopathy: Comprehensive characterisation and pathogenic insights. Annals of Neurology. PMID 29691892 DOI: 10.1002/Ana.25241  0.209
2008 Scharf T, Chapman L, Collins J, Limanowski J, Heaney C, Goldenhar LM. Intervention effectiveness evaluation criteria: promoting competitions and raising the bar. Journal of Occupational Health Psychology. 13: 1-9. PMID 18211164 DOI: 10.1037/1076-8998.13.1.1  0.209
2011 Foley AR, Qmijano-Roy S, Collins J, Straub V, Deconinck N, Mercuri E, D'Amico A, Bertini E, Ryan M, Muntoni F, Bönnemann C. P62 The identification of a viable outcome measure in the collagen VI myopathies promotes progress toward clinical trials Neuromuscular Disorders. 21: 662. DOI: 10.1016/S0960-8966(11)70081-5  0.209
1995 Collins JJ. The redundant nature of locomotor optimization laws. Journal of Biomechanics. 28: 251-67. PMID 7730385 DOI: 10.1016/0021-9290(94)00072-C  0.208
2015 Collins JJ, Anteau SE, Swaen GM, Bodner KM, Bodnar CM. Lymphatic and hematopoietic cancers among benzene-exposed workers. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 57: 159-63. PMID 25654516 DOI: 10.1097/Jom.0000000000000324  0.208
2015 Villa CR, Ryan TD, Collins JJ, Taylor MD, Lucky AW, Jefferies JL. Left ventricular non-compaction cardiomyopathy associated with epidermolysis bullosa simplex with muscular dystrophy and PLEC1 mutation. Neuromuscular Disorders : Nmd. 25: 165-8. PMID 25454730 DOI: 10.1016/J.Nmd.2014.09.011  0.208
2004 Collins JJ, Bodner KM, Baase CM, Burns C, Jammer B, Bloemen LJ. Communication of epidemiology study results by industry: the Dow Chemical Company approach. Journal of Exposure Analysis and Environmental Epidemiology. 14: 492-7. PMID 15305168 DOI: 10.1038/Sj.Jea.7500394  0.208
1997 Kraus JF, Gardner L, Collins J, Sorock G, Volinn E. Design factors in epidemiologic cohort studies of work-related low back injury or pain American Journal of Industrial Medicine. 32: 153-163. PMID 9215437 DOI: 10.1002/(SICI)1097-0274(199708)32:2<153::AID-AJIM6>3.0.CO;2  0.208
2002 Liu W, Lipsitz LA, Montero-Odasso M, Bean J, Kerrigan DC, Collins JJ. Noise-enhanced vibrotactile sensitivity in older adults, patients with stroke, and patients with diabetic neuropathy. Archives of Physical Medicine and Rehabilitation. 83: 171-6. PMID 11833019 DOI: 10.1053/Apmr.2002.28025  0.208
2018 Qualls AE, Donkervoort S, Herkert JC, D'Gama AM, Bharucha-Goebel D, Collins J, Chao KR, Foley AR, Schoots MH, Jongbloed JDH, Bönnemann CG, Agrawal PB. Novel SPEG mutations in congenital myopathies: Genotype-phenotype correlations. Muscle & Nerve. PMID 30412272 DOI: 10.1002/Mus.26378  0.207
1997 Ireland B, Collins JJ, Buckley CF, Riordan SG. Cancer mortality among workers with benzene exposure Epidemiology. 8: 318-320. PMID 9115030 DOI: 10.1097/00001648-199705000-00016  0.207
2019 Johnston CW, Collins JJ. Engineering microbial peer pressure. Science (New York, N.Y.). 365: 986-987. PMID 31488676 DOI: 10.1126/Science.Aay3157  0.207
2004 Turpin RS, Ozminkowski RJ, Sharda CE, Collins JJ, Berger ML, Billotti GM, Baase CM, Olson MJ, Nicholson S. Reliability and validity of the Stanford Presenteeism Scale. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 46: 1123-33. PMID 15534499 DOI: 10.1097/01.Jom.0000144999.35675.A0  0.207
2012 Wong BL, Hu S, Bange J, Rybalsky I, Collins J, Rutter MM, McCormick A, McGuire M, McMahon M, Horn P, Boutwell D. T.P.50 Outcomes associated with an Interdisciplinary Comprehensive Care program for DMD patients treated with long term glucocorticoids Neuromuscular Disorders. 22: 866. DOI: 10.1016/J.Nmd.2012.06.210  0.207
2003 Collins JJ, Ireland B, Buckley CF, Shepperly D. Lymphohaematopoeitic cancer mortality among workers with benzene exposure. Occupational and Environmental Medicine. 60: 676-9. PMID 12937190 DOI: 10.1136/Oem.60.9.676  0.207
2020 Kaminski MM, Alcantar MA, Lape IT, Greensmith R, Huske AC, Valeri JA, Marty FM, Klämbt V, Azzi J, Akalin E, Riella LV, Collins JJ. A CRISPR-based assay for the detection of opportunistic infections post-transplantation and for the monitoring of transplant rejection. Nature Biomedical Engineering. PMID 32284553 DOI: 10.1038/S41551-020-0546-5  0.206
2011 Burns C, Bodner K, Swaen G, Collins J, Beard K, Lee M. Cancer incidence of 2,4-D production workers. International Journal of Environmental Research and Public Health. 8: 3579-90. PMID 22016704 DOI: 10.3390/Ijerph8093579  0.206
2015 Nichols C, Lehky T, Waite M, Duong T, Nelson L, Keller K, Lott D, Meilleur K, Collins J, Dastgir J, Vuillerot C, Rutkowski A, Donkervoort S, Leach M, Jain M, et al. Electrical impedance myography as a potential biomarker in individuals with COL6-related dystrophy Neuromuscular Disorders. 25. DOI: 10.1016/J.Nmd.2015.06.288  0.206
2013 Collins JJ, Bodner KM, Bus JS. Cancer mortality of workers exposed to styrene in the U.S. Reinforced plastics and composite industry. Epidemiology (Cambridge, Mass.). 24: 195-203. PMID 23344212 DOI: 10.1097/Ede.0B013E318281A30F  0.205
2017 Socias-Morales C, Collins J, Menendez CC. 142 Epidemiology of work-related falls Injury Prevention. 23. DOI: 10.1136/Injuryprev-2017-042560.142  0.205
2013 Jojic V, Shay T, Sylvia K, Zuk O, Sun X, Kang J, Regev A, Koller D, Best AJ, Knell J, Goldrath A, Joic V, Koller D, Shay T, ... ... Collins J, et al. Identification of transcriptional regulators in the mouse immune system. Nature Immunology. 14: 633-43. PMID 23624555 DOI: 10.1038/Ni.2587  0.204
2008 Haidar S, Burns CJ, Birdsong K, Bodner K, Salazar E, Collins JJ. Brain and Central Nervous System Cancer and Benign Brain Tumors Among Chemical Plant Workers in Texas The Open Epidemiology Journal. 1: 26-29. DOI: 10.2174/1874297100801010026  0.204
1997 Hall K, Christini DJ, Tremblay M, Collins JJ, Glass L, Billette J. Dynamic Control of Cardiac Alternans Physical Review Letters. 78: 4518-4521. DOI: 10.1103/Physrevlett.78.4518  0.204
2013 Wong BL, Miller L, Hu SY, Horn P, McCormick A, McGuire M, Rybalsky I, Morehart P, Bange J, Collins J. P.11.6 Functional motor changes in Duchenne Muscular Dystrophy (DMD) patients on long term daily glucocorticoid (GC) treatment Neuromuscular Disorders. 23: 800. DOI: 10.1016/J.Nmd.2013.06.567  0.204
2006 Collins JJ, Tudor C, Leonard JM, Chuck G, Franz DN. Levetiracetam as adjunctive antiepileptic therapy for patients with tuberous sclerosis complex: a retrospective open-label trial. Journal of Child Neurology. 21: 53-7. PMID 16551454 DOI: 10.1177/08830738060210011201  0.203
2013 Rutter MM, Collins J, Sawnani H, Horn P, Blum S, Hu SY, Morehart P, Taylor MD, Wong BL. P.11.10 Height predictions using ulna length are inaccurate in glucocorticoid-treated boys with Duchenne Muscular Dystrophy (DMD) Neuromuscular Disorders. 23: 801. DOI: 10.1016/J.Nmd.2013.06.571  0.203
2014 Collins JJ, Jammer B, Sladeczek FM, Bodnar CM, Salomon SS. Surveillance for angiosarcoma of the liver among vinyl chloride workers. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 56: 1207-9. PMID 25376416 DOI: 10.1097/Jom.0000000000000247  0.203
2011 Foley AR, Quijano-Roy S, Collins J, Straub V, Deconinck N, Mercuri EM, D'Amico A, Bertini E, North K, Ryan M, Muntoni F, Bönnemann C. 1FC2.3 The Identification of a Viable Outcome Measure in the Collagen VI Myopathies Promotes Progress Toward Clinical Trials European Journal of Paediatric Neurology. 15. DOI: 10.1016/S1090-3798(11)70049-6  0.203
2020 Rutter MM, Wong BL, Collins JJ, Sawnani H, Taylor MD, Horn PS, Backeljauw PF. Recombinant human insulin-like growth factor-1 (rhIGF-1) therapy for six months improves growth but not motor function in boys with Duchenne Muscular Dystrophy. Muscle & Nerve. PMID 32108355 DOI: 10.1002/Mus.26846  0.202
2020 Brouwer AF, Zelner JL, Eisenberg MC, Kimmins L, Ladisky M, Collins J, Eisenberg JNS. The impact of vaccination efforts on the spatiotemporal patterns of the hepatitis A outbreak in Michigan, 2016-18. Epidemiology (Cambridge, Mass.). PMID 32618711 DOI: 10.1097/Ede.0000000000001218  0.202
2012 Collins J. Synthetic Biology: Bits and pieces come to life Nature. 483: S8-S10. PMID 22378128 DOI: 10.1038/483S8A  0.201
2005 Collins JJ, Baase CM, Sharda CE, Ozminkowski RJ, Nicholson S, Billotti GM, Turpin RS, Olson M, Berger ML. The assessment of chronic health conditions on work performance, absence, and total economic impact for employers. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 47: 547-57. PMID 15951714 DOI: 10.1097/01.Jom.0000166864.58664.29  0.201
2017 Cassidy LD, Doney B, Wang ML, Kurth L, Conner PR, Collins JJ, Carson M, Molenaar D, Redlich CA, Storey E. Medical Monitoring for Occupational Asthma Among Toluene Diisocyanate Production Workers in the United States. Journal of Occupational and Environmental Medicine. 59: S13-S21. PMID 29200134 DOI: 10.1097/Jom.0000000000001197  0.201
2009 Haidar S, Burns C, Birdsong K, Bodner K, Salazar E, Collins JJ. Mortality among chemical workers at Texas City plant: 1940-2001. International Archives of Occupational and Environmental Health. 82: 145-51. PMID 18365238 DOI: 10.1007/S00420-008-0316-2  0.2
2001 Slavin MD, Lipsitz LA, Laughton CA, Katdare K, Shukla UE, Collins JJ. Postural Control And Muscle Activity During Quiet Standing In Community Dwelling Elderly. Journal of Geriatric Physical Therapy. 24: 16. DOI: 10.1519/00139143-200124030-00016  0.2
1993 Collins JJ, Strauss ME, Levinskas GJ, Conner PI. Potential Confounding of Associations Involving Occupational Exposure to 2,3,7,8− Tetrachlorodibenzo-p-dioxin Epidemiology. 4: 483. DOI: 10.1097/00001648-199309000-00018  0.2
2008 Collins J. Review: What is Life? by Ed Regis New Scientist. 198: 47. DOI: 10.1016/S0262-4079(08)61106-9  0.2
2018 McBride DI, Collins JJ, Bender TJ, Bodner KM, Aylward LL. Cohort study of workers at a New Zealand agrochemical plant to assess the effect of dioxin exposure on mortality. Bmj Open. 8: e019243. PMID 30337303 DOI: 10.1136/Bmjopen-2017-019243  0.2
2012 Weatherspoon SE, Collins J, Sucharew H, Wong BL, Rybalsky I, Rose SR, Klein DJ, Rutter MM. T.P.51 Metformin reduces weight and BMI in Duchenne muscular dystrophy patients on long term glucocorticoid therapy Neuromuscular Disorders. 22: 866. DOI: 10.1016/J.Nmd.2012.06.211  0.2
1999 Collins JJ, Strauss ME, Riordan SG. Mortalities of workers at the Nitro plant with exposure to 2-mercaptobenzothialzole. Occupational and Environmental Medicine. 56: 667-71. PMID 10658544 DOI: 10.1136/Oem.56.10.667  0.198
2012 Rutter MM, Collins J, Rose SR, Woo JG, Sucharew H, Sawnani H, Hor KN, Cripe LH, Wong BL. Growth hormone treatment in boys with Duchenne muscular dystrophy and glucocorticoid-induced growth failure. Neuromuscular Disorders : Nmd. 22: 1046-56. PMID 22967789 DOI: 10.1016/J.Nmd.2012.07.009  0.197
2012 Collins J, Foley AR, Straub V, Bönnemann CG. Spontaneous keloid formation in patients with Bethlem myopathy. Neurology. 79: 2158. PMID 23170014 DOI: 10.1212/Wnl.0B013E3182752Ebc  0.197
2016 Collins JJ, Bodner KM, Aylward LL, Bender TJ, Anteau S, Wilken M, Bodnar CM. Mortality risk among workers with exposure to dioxins. Occupational Medicine (Oxford, England). PMID 27932487 DOI: 10.1093/Occmed/Kqw167  0.197
2011 Saberi A, Collins J, Newmark P. Neuropeptide signaling in planarian sexual development and regeneration Developmental Biology. 356: 129. DOI: 10.1016/J.Ydbio.2011.05.092  0.196
2001 Marsh GM, Youk AO, Collins JJ. Reevaluation of lung cancer risk in the acrylonitrile cohort study of the National Cancer Institute and the National Institute for Occupational Safety and Health. Scandinavian Journal of Work, Environment & Health. 27: 5-13. PMID 11266147 DOI: 10.5271/Sjweh.581  0.195
2017 Collins JJ, Anteau S, Conner PR, Cassidy LD, Doney B, Wang ML, Kurth L, Carson M, Molenaar D, Redlich CA, Storey E. Incidence of Occupational Asthma and Exposure to Toluene Diisocyanate in the United States Toluene Diisocyanate Production Industry. Journal of Occupational and Environmental Medicine. 59: S22-S27. PMID 29200135 DOI: 10.1097/Jom.0000000000000890  0.195
2017 Wang ML, Storey E, Cassidy LD, Doney B, Conner PR, Collins JJ, Carson M, Molenaar D. Longitudinal and Cross-sectional Analyses of Lung Function in Toluene Diisocyanate Production Workers. Journal of Occupational and Environmental Medicine. 59: S28-S35. PMID 29200136 DOI: 10.1097/Jom.0000000000001124  0.194
2014 Collins JJ, Bodner KM, Bus JS. Nonmalignant respiratory disease mortality in styrene-exposed workers. Epidemiology (Cambridge, Mass.). 25: 161-2. PMID 24296937 DOI: 10.1097/Ede.0B013E3182A798Fa  0.194
2011 Collins JJ, Molenaar DM, Bowler LO, Harbourt TJ, Carson M, Avashia B, Calhoun T, Vitrano C, Ameis P, Chalfant R, Howard P. Results from the US industry-wide phosgene surveillance: the Diller Registry. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 53: 239-44. PMID 21293301 DOI: 10.1097/Jom.0B013E31820C90Cf  0.194
2003 Evanoff B, Wolf L, Aton E, Canos J, Collins J. Reduction in injury rates in nursing personnel through introduction of mechanical lifts in the workplace American Journal of Industrial Medicine. 44: 451-457. PMID 14571508 DOI: 10.1002/Ajim.10294  0.193
1999 Osipov GV, Collins JJ. Using weak impulses to suppress traveling waves in excitable media. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: 54-7. PMID 11969736 DOI: 10.1103/Physreve.60.54  0.193
2018 Collard M, Wachsmann J, Thrash S, Herring S, Caramucci M, Hrebec L, Collins J, Kwon J. A Multi-Targeted Quality Improvement Project of CT-Guided Procedure Start Times. American Journal of Medical Quality : the Official Journal of the American College of Medical Quality. 1062860618770406. PMID 29660993 DOI: 10.1177/1062860618770406  0.193
1998 Richardson KA, Imhoff TT, Grigg P, Collins JJ. Encoding Chaos in Neural Spike Trains Physical Review Letters. 80: 2485-2488. DOI: 10.1103/Physrevlett.80.2485  0.193
2018 Rhoads JM, Collins J, Fatheree NY, Hashmi SS, Taylor CM, Luo M, Hoang TK, Gleason WA, Van Arsdall MR, Navarro F, Liu Y. Infant Colic Represents Gut Inflammation and Dysbiosis. The Journal of Pediatrics. PMID 30177353 DOI: 10.1016/J.Jpeds.2018.07.042  0.193
2023 Yang X, Rocks JW, Jiang K, Walters AJ, Rai K, Liu J, Nguyen J, Olson SD, Mehta P, Collins JJ, Daringer NM, Bashor CJ. Engineering synthetic phosphorylation signaling networks in human cells. Biorxiv : the Preprint Server For Biology. PMID 37745327 DOI: 10.1101/2023.09.11.557100  0.193
2019 Lee R, Guixe HDP, Dvorin J, Collins J. 1832. Development of an Ultrasensitive Field-Applicable Plasmodium falciparum Assay for Malaria Diagnosis and Eradication Open Forum Infectious Diseases. 6. DOI: 10.1093/Ofid/Ofz359.094  0.192
2014 Pardee K, Green AA, Ferrante T, Cameron DE, DaleyKeyser A, Yin P, Collins JJ. Paper-based synthetic gene networks. Cell. 159: 940-54. PMID 25417167 DOI: 10.1016/j.cell.2014.10.004  0.192
2015 Jain M, Meilleur K, Nichols C, Waite M, Parks R, Hodsdon B, Bendixen R, Hsia N, Glanzman A, Nelson L, Keller K, Duong T, McGuire M, Dastgir J, Donkervoort S, ... ... Collins J, et al. Comparison of upper extremity measures in individuals with COL6 and LAMA2-muscular dystrophies Neuromuscular Disorders. 25. DOI: 10.1016/J.Nmd.2015.06.287  0.191
2010 Collins JJ, Rutter MM, Woo J, Rose S, Sawnani H, Cripe L, Kinnet K, Hor K, Wong B. P4.13 Growth hormone improves growth in Duchenne muscular dystrophy with steroid-induced growth failure Neuromuscular Disorders. 20: 662-662. DOI: 10.1016/J.Nmd.2010.07.209  0.19
2006 Collins J, Wong B, McCullough A, Quinlan J. T.P.2 10 The effects of prednisone on exercised-induced muscle damage in mdx mice Neuromuscular Disorders. 16: 706. DOI: 10.1016/J.Nmd.2006.05.202  0.189
2011 Collins J, Hu S, Devarajan P, Bonnemann CG, Bennett M. P2.1 Candidate biomarkers in merosin-deficient congenital muscular dystrophy Neuromuscular Disorders. 21: 660-661. DOI: 10.1016/J.Nmd.2011.06.824  0.188
1994 De Luca C, Collins J. The effects of visual input on postural stability Journal of Biomechanics. 27: 724. DOI: 10.1016/0021-9290(94)91125-8  0.187
1987 Collins JJ, Utidijian D. Cancers of the Nasopharynx and Oropharynx and Formaldehyde Exposure: Reply Journal of the National Cancer Institute. 78: 192-193. DOI: 10.1093/Jnci/78.1.192  0.187
2011 Rutter MM, Rose SR, Collins J, Sucherew H, Wong BL, Rybalsky I. P4.1 Puberty is delayed or absent in Duchenne Muscular Dystrophy boys on chronic glucocorticoid therapy Neuromuscular Disorders. 21: 704. DOI: 10.1016/J.Nmd.2011.06.966  0.187
2009 Collins JJ. Journal club. A bioengineer gets schooled by Escherichia coli. Nature. 460: 155. PMID 19587723 DOI: 10.1038/460155E  0.186
1995 Collins JJ, Chow CC, Imhoff TT. Tuning stochastic resonance Nature. 378: 341-342. DOI: 10.1038/378341C0  0.186
2016 Bharucha-Goebel D, Collins J, Hu Y, Foley AR, Donkervoort S, Leach M, Dastgir N, Vuillerot C, Meilleur K, Jain M, Waite M, Jacobson S, Gordish H, Rutkowski A, Hoffman E, et al. Serum biomarker discovery for congenital muscular dystrophies Neuromuscular Disorders. 26. DOI: 10.1016/J.Nmd.2016.06.374  0.185
2005 Gant N, Collins J, OʼNeil L, Pell R, Williams C. Carbohydrate Ingestion During Exhaustive High-intensity Intermittent Shuttle Running In The Heat: 58 10:45 AM - 11:00 AM Medicine and Science in Sports and Exercise. 37. DOI: 10.1097/00005768-200505001-00058  0.185
2022 Cubillos-Ruiz A, Alcantar MA, Donghia NM, Cárdenas P, Avila-Pacheco J, Collins JJ. An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis. Nature Biomedical Engineering. PMID 35411114 DOI: 10.1038/s41551-022-00871-9  0.183
2021 English MA, Gayet RV, Collins JJ. Designing Biological Circuits: Synthetic Biology Within the Operon Model and Beyond. Annual Review of Biochemistry. PMID 33784178 DOI: 10.1146/annurev-biochem-013118-111914  0.181
2010 Collins J. Engineering new medicine: an interview with James Collins. Disease Models & Mechanisms. 3: 403-6. PMID 20610692 DOI: 10.1242/dmm.006023  0.181
2007 Collins J, Knue M, Wang C, Kinnett K, Kalra M, Cripe L, Wong B. G.P.1.06 Outcome of Duchenne muscular dystrophy patients treated with daily deflazacort, daily prednisone, low dose 10 days on/10 days off prednisone and high dose weekend prednisone Neuromuscular Disorders. 17: 773-774. DOI: 10.1016/J.Nmd.2007.06.046  0.181
2022 Zheng EJ, Andrews IW, Grote AT, Manson AL, Alcantar MA, Earl AM, Collins JJ. Modulating the evolutionary trajectory of tolerance using antibiotics with different metabolic dependencies. Nature Communications. 13: 2525. PMID 35534481 DOI: 10.1038/s41467-022-30272-0  0.181
2022 Chua MJ, Collins J. Rapid, Efficient, and Cost-Effective Gene Editing of Enterococcus faecium with CRISPR-Cas12a. Microbiology Spectrum. e0242721. PMID 35107356 DOI: 10.1128/spectrum.02427-21  0.181
2001 Baker R, Brockhaus A, Boucier D, Chapman L, Collins J, Goldenhar L, Heaney C, Katz T, Landsbergis P, Martonik J, Most I, Schneider S, Scharf T, Sinclair R. May 2000 supplement on preventing occupational injuries. American Journal of Preventive Medicine. 20: 308-9. PMID 11392320 DOI: 10.1016/S0749-3797(01)00291-4  0.18
2002 Collins JJ. A Framework for Addressing Health Issues Journal of Occupational and Environmental Medicine. 44: 393. DOI: 10.1097/00043764-200205000-00002  0.18
2022 Wong F, Stokes JM, Bening SC, Vidoudez C, Trauger SA, Collins JJ. Reactive metabolic byproducts contribute to antibiotic lethality under anaerobic conditions. Molecular Cell. PMID 35973427 DOI: 10.1016/j.molcel.2022.07.009  0.179
2006 Collins J, Wong B, Quinlan J, McCullough A, Dardzinski B. G.P.5 04 T2 relaxation time mapping and diffusion weighted imaging (DWI) changes of exercised and non-exercised mdx and wild type mice Neuromuscular Disorders. 16: 692. DOI: 10.1016/J.Nmd.2006.05.160  0.179
2016 Wong C, Mitchell D, Collins J, Zucconi M, Cabrera A, Miner A, David T, Robertson C. An Unusual Cause Of Sore Throat And Thigh Pain In A Football Player.: 153 June 1, 10: 30 AM - 10: 50 AM. Medicine and Science in Sports and Exercise. 48: 25. PMID 27359408 DOI: 10.1249/01.Mss.0000485084.58624.D0  0.178
2023 Ghosh S, Erickson D, Chua MJ, Collins J, Jala VR. The microbial metabolite Urolithin A reduces toxin expression and repairs toxin-induced epithelial damage. Biorxiv : the Preprint Server For Biology. PMID 37546803 DOI: 10.1101/2023.07.24.550342  0.178
2003 Collins JJ. Move to the rhythm Nature. 422: 117-118. DOI: 10.1038/422117A  0.177
2017 Gutierrez A, Jain S, Bhargava P, Hamblin M, Lobritz MA, Collins JJ. Understanding and Sensitizing Density-Dependent Persistence to Quinolone Antibiotics. Molecular Cell. PMID 29225037 DOI: 10.1016/j.molcel.2017.11.012  0.176
2018 Jang S, Dumot JA, Parsi MA, Collins J, Vargo JJ. Su2012 - Utility of Self-Expandable Metallic Stent in the Management of Gastric Outlet Obstruction Gastroenterology. 154. DOI: 10.1016/S0016-5085(18)32356-4  0.173
2021 Wong F, Stokes JM, Cervantes B, Penkov S, Friedrichs J, Renner LD, Collins JJ. Cytoplasmic condensation induced by membrane damage is associated with antibiotic lethality. Nature Communications. 12: 2321. PMID 33875652 DOI: 10.1038/s41467-021-22485-6  0.172
2023 Ilia K, Shakiba N, Bingham T, Jones RD, Kaminski MM, Aravera E, Bruno S, Palacios S, Weiss R, Collins JJ, Del Vecchio D, Schlaeger TM. Synthetic genetic circuits to uncover the OCT4 trajectories of successful reprogramming of human fibroblasts. Science Advances. 9: eadg8495. PMID 38019912 DOI: 10.1126/sciadv.adg8495  0.169
2020 Wendt G, Zhao L, Chen R, Liu C, O'Donoghue AJ, Caffrey CR, Reese ML, Collins JJ. A single-cell RNA-seq atlas of identifies a key regulator of blood feeding. Science (New York, N.Y.). 369: 1644-1649. PMID 32973030 DOI: 10.1126/science.abb7709  0.169
2022 Morales-Vicente DA, Zhao L, Silveira GO, Tahira AC, Amaral MS, Collins JJ, Verjovski-Almeida S. Single-cell RNA-seq analyses show that long non-coding RNAs are conspicuously expressed in gamete and tegument progenitor cell populations. Frontiers in Genetics. 13: 924877. PMID 36204320 DOI: 10.3389/fgene.2022.924877  0.166
2023 Liu G, Catacutan DB, Rathod K, Swanson K, Jin W, Mohammed JC, Chiappino-Pepe A, Syed SA, Fragis M, Rachwalski K, Magolan J, Surette MG, Coombes BK, Jaakkola T, Barzilay R, ... Collins JJ, et al. Deep learning-guided discovery of an antibiotic targeting Acinetobacter baumannii. Nature Chemical Biology. PMID 37231267 DOI: 10.1038/s41589-023-01349-8  0.165
2023 Wong F, Omori S, Donghia NM, Zheng EJ, Collins JJ. Discovering small-molecule senolytics with deep neural networks. Nature Aging. PMID 37142829 DOI: 10.1038/s43587-023-00415-z  0.161
2021 Cho JH, Okuma A, Sofjan K, Lee S, Collins JJ, Wong WW. Engineering advanced logic and distributed computing in human CAR immune cells. Nature Communications. 12: 792. PMID 33542232 DOI: 10.1038/s41467-021-21078-7  0.16
2023 Ilia K, Shakiba N, Bingham T, Jones RD, Kaminski MM, Aravera E, Bruno S, Palacios S, Weiss R, Collins JJ, Del Vecchio D, Schlaeger TM. Synthetic genetic circuits to uncover and enforce the OCT4 trajectories of successful reprogramming of human fibroblasts. Biorxiv : the Preprint Server For Biology. PMID 36747813 DOI: 10.1101/2023.01.25.525529  0.158
2013 Mingueneau M, Kreslavsky T, Gray D, Heng T, Cruse R, Ericson J, Bendall S, Spitzer MH, Nolan GP, Kobayashi K, von Boehmer H, Mathis D, Benoist C, Best AJ, ... ... Collins J, et al. The transcriptional landscape of αβ T cell differentiation. Nature Immunology. 14: 619-32. PMID 23644507 DOI: 10.1038/Ni.2590  0.156
2023 Zheng EJ, Valeri JA, Andrews IW, Krishnan A, Bandyopadhyay P, Anahtar MN, Herneisen A, Schulte F, Linnehan B, Wong F, Stokes JM, Renner LD, Lourido S, Collins JJ. Discovery of antibiotics that selectively kill metabolically dormant bacteria. Cell Chemical Biology. PMID 38029756 DOI: 10.1016/j.chembiol.2023.10.026  0.156
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