Sunduz Keles, Ph.D.
Affiliations: | University of Wisconsin, Madison, Madison, WI | ||
| 2003 | University of California, Berkeley, Berkeley, CA, United States |
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"Sunduz Keles"Parents
Sign in to add mentor| Mark J. van der Laan | grad student | 2003 | UC Berkeley | |
| (Statistical methods for cis -regulatory motif detection in DNA sequences, and, Two censored data problems.) | ||||
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Publications
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| Liu P, Soukup AA, Bresnick EH, et al. (2020) PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments. Genome Research |
| Johnson KD, Conn DJ, Shishkova E, et al. (2020) Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories. The Journal of Experimental Medicine. 217 |
| Zheng Y, Zhou P, Keleş S. (2020) FreeHi-C spike-in simulations for benchmarking differential chromatin interaction detection. Methods (San Diego, Calif.) |
| Liao R, Zheng Y, Liu X, et al. (2020) Discovering How Heme Controls Genome Function Through Heme-omics. Cell Reports. 31: 107832 |
| Chen F, Keleş S. (2020) SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins. Genome Biology. 21: 139 |
| Damaschke NA, Gawdzik J, Avilla M, et al. (2020) CTCF loss mediates unique DNA hypermethylation landscapes in human cancers. Clinical Epigenetics. 12: 80 |
| Rojo C, Zhang Q, Keleş S. (2019) iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. Genetic Epidemiology |
| Zheng Y, Ay F, Keles S. (2019) Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies. Elife. 8 |
| Soukup A, Johnson KD, Conn DJ, et al. (2019) GATA2-Dependent Developmental and Regenerative Networks Blood. 134: 1182-1182 |
| Shin S, Hudson R, Harrison C, et al. (2018) atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding. Bioinformatics (Oxford, England) |