Viacheslav Fofanov, Ph.D.
Affiliations: | 2008 | Rice University, Houston, TX |
Area:
Statistics, Biostatistics BiologyGoogle:
"Viacheslav Fofanov"Parents
Sign in to add mentor| Marek Kimmel | grad student | 2008 | Rice University | |
| (Statistical models in protein structural alignments.) | ||||
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Publications
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| Bryant DH, Moll M, Chen BY, et al. (2010) Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. Bmc Bioinformatics. 11: 242 |
| Kristensen DM, Ward RM, Lisewski AM, et al. (2008) Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. Bmc Bioinformatics. 9: 17 |
| Fofanov VY, Chen BY, Bryant DH, et al. (2008) A statistical model to correct systematic bias introduced by algorithmic thresholds in protein structural comparison algorithms Proceedings - 2008 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw. 1-8 |
| Chen BY, Bryant DH, Cruess AE, et al. (2007) Composite motifs integrating multiple protein structures increase sensitivity for function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 343-55 |
| Chen BY, Fofanov VY, Bryant DH, et al. (2007) The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 791-816 |
| Chen BY, Bryant DH, Fofanov VY, et al. (2007) Cavity scaling: automated refinement of cavity-aware motifs in protein function prediction. Journal of Bioinformatics and Computational Biology. 5: 353-82 |
| Chen BY, Bryant DH, Fofanov VY, et al. (2006) Cavity-aware motifs reduce false positives in protein function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 311-23 |
| Kristensen DM, Chen BY, Fofanov VY, et al. (2006) Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity. Protein Science : a Publication of the Protein Society. 15: 1530-6 |
| Chen BY, Fofanov VY, Bryant DH, et al. (2006) Geometric sieving: Automated distributed optimization of 3D motifs for protein function prediction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 500-515 |
| Chen BY, Fofanov VY, Kristensen DM, et al. (2005) Algorithms for structural comparison and statistical analysis of 3D protein motifs. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 334-45 |