Patrice Koehl
Affiliations: | Applied Mathematics | University of California, Davis, Davis, CA |
Area:
Applied Mathematics, General Biophysics, BiochemistryGoogle:
"Patrice Koehl"Children
Sign in to add trainee| Patricia A. Francis-Lyon | grad student | 2011 | UC Davis |
| Paul F. Mach | grad student | 2012 | UC Davis |
| David D. Gae | grad student | 2013 | UC Davis |
Collaborators
Sign in to add collaborator| Marc Delarue | collaborator | UC Davis Genome Center (Chemistry Tree) |
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Publications
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| Hsieh YC, Delarue M, Orland H, et al. (2023) Analyzing the Geometry and Dynamics of Viral Structures: A Review of Computational Approaches Based on Alpha Shape Theory, Normal Mode Analysis, and Poisson-Boltzmann Theories. Viruses. 15 |
| Koehl P, Orland H, Delarue M. (2021) Parameterizing elastic network models to capture the dynamics of proteins. Journal of Computational Chemistry |
| Koehl P, Delarue M, Orland H. (2021) Simultaneous Identification of Multiple Binding Sites in Proteins: A Statistical Mechanics Approach. The Journal of Physical Chemistry. B |
| Koehl P, Delarue M, Orland H. (2021) Physics approach to the variable-mass optimal-transport problem. Physical Review. E. 103: 012113 |
| Koehl P, Delarue M, Orland H. (2019) Optimal transport at finite temperature. Physical Review. E. 100: 013310 |
| Koehl P, Delarue M, Orland H. (2019) Statistical Physics Approach to the Optimal Transport Problem. Physical Review Letters. 123: 040603 |
| Koehl P, Orland H, Delarue M. (2018) Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments. Molecules (Basel, Switzerland). 24 |
| Hu H, Ataka K, Menny A, et al. (2018) Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Proceedings of the National Academy of Sciences of the United States of America |
| Koehl P, Delarue M. (2018) Coarse-grained dynamics of supramolecules: Conformational changes in outer shells of Dengue viruses. Progress in Biophysics and Molecular Biology |
| Delarue M, Koehl P. (2018) Combined approaches from physics, statistics, and computer science for protein structure prediction: (unity is strength)? F1000research. 7 |