S Cenk Sahinalp
Affiliations: | Case Western Reserve University, Cleveland Heights, OH, United States |
Area:
Computer Science, Genetics, Biostatistics BiologyGoogle:
"S Sahinalp"
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Publications
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| Hari A, Zhou Q, Gonzaludo N, et al. (2023) An efficient genotyper and star-allele caller for pharmacogenomics. Genome Research. 33: 61-70 |
| Zhu K, Schäffer AA, Robinson W, et al. (2022) Strain level microbial detection and quantification with applications to single cell metagenomics. Nature Communications. 13: 6430 |
| Ford MKB, Hari A, Rodriguez O, et al. (2022) ImmunoTyper-SR: A computational approach for genotyping immunoglobulin heavy chain variable genes using short-read data. Cell Systems. 13: 808-816.e5 |
| Ford M, Hari A, Rodriguez O, et al. (2022) ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data. Biorxiv : the Preprint Server For Biology |
| Kockan C, Zhu K, Dokmai N, et al. (2020) Sketching algorithms for genomic data analysis and querying in a secure enclave. Nature Methods. 17: 295-301 |
| Haghshenas E, Sahinalp SC, Hach F. (2019) lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data. Bioinformatics (Oxford, England). 35: 20-27 |
| Lin YY, Gawronski A, Hach F, et al. (2017) Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinformatics (Oxford, England) |
| McPherson AW, Roth A, Ha G, et al. (2017) Correction to: ReMixT: clone-specific genomic structure estimation in cancer. Genome Biology. 18: 188 |
| Kalina JL, Neilson DS, Lin YY, et al. (2017) Mutational Analysis of Gene Fusions Predicts Novel MHC Class I-Restricted T cell Epitopes & Immune Signatures in a Subset of Prostate Cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research |
| Shrestha R, Hodzic E, Sauerwald T, et al. (2017) HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology. Genome Research |