Yousef Al-Kofahi, Ph.D.
Affiliations: | 2009 | Rensselaer Polytechnic Institute, Troy, NY, United States |
Area:
Electronics and Electrical Engineering, Computer ScienceGoogle:
"Yousef Al-Kofahi"Parents
Sign in to add mentor| Badrinath Roysam | grad student | 2009 | RPI | |
| (Algorithms and framework for cellular-scale mapping of complex biological tissues from two-dimensional/three-dimensional multi-spectral images.) | ||||
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Publications
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| Ghose S, Ju Y, McDonough E, et al. (2023) 3D reconstruction of skin and spatial mapping of immune cell density, vascular distance and effects of sun exposure and aging. Communications Biology. 6: 718 |
| Sood A, Sui Y, McDonough E, et al. (2020) Comparison of Multiplexed Immunofluorescence Imaging to Chromogenic Immunohistochemistry of Skin Biomarkers in Response to Monkeypox Virus Infection. Viruses. 12 |
| Berens ME, Sood A, Barnholtz-Sloan JS, et al. (2019) Multiscale, multimodal analysis of tumor heterogeneity in IDH1 mutant vs wild-type diffuse gliomas. Plos One. 14: e0219724 |
| Al-Kofahi Y, Zaltsman A, Graves R, et al. (2018) A deep learning-based algorithm for 2-D cell segmentation in microscopy images. Bmc Bioinformatics. 19: 365 |
| Spagnolo DM, Al-Kofahi Y, Zhu P, et al. (2017) Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images. Cancer Research. 77: e71-e74 |
| McKinley ET, Sui Y, Al-Kofahi Y, et al. (2017) Optimized multiplex immunofluorescence single-cell analysis reveals tuft cell heterogeneity. Jci Insight. 2 |
| Spagnolo DM, Gyanchandani R, Al-Kofahi Y, et al. (2016) Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers. Journal of Pathology Informatics. 7: 47 |
| Al-Kofahi Y, Sevinsky C, Santamaria-Pang A, et al. (2016) Multi-channel algorithm for segmentation of tumor blood vessels using multiplexed image data Proceedings - International Symposium On Biomedical Imaging. 2016: 213-216 |
| Al-Kofahi Y, Padfield D, Seppo A. (2013) An automated algorithm for cell-level FISH dot counting Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8669 |
| Seppo A, Al-Kofahi Y, Padfield D, et al. (2012) Abstract P3-05-06: Automated analysis of Her2 FISH using combined Immunofluorescence and FISH signals Cancer Research. 72 |